Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61066 | Canola | nucleus | 93.85 | 71.79 |
| CDY00369 | Canola | nucleus | 92.18 | 70.51 |
| AT1G21326.1 | Thale cress | nucleus | 61.45 | 46.03 |
| Bra025892.1-P | Field mustard | nucleus | 58.1 | 45.22 |
| KRH18125 | Soybean | nucleus | 37.43 | 27.92 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 37.99 | 26.98 |
| KRH15991 | Soybean | nucleus | 34.64 | 26.16 |
| Solyc06g060470.1.1 | Tomato | nucleus | 33.52 | 25.0 |
| PGSC0003DMT400045282 | Potato | nucleus | 34.08 | 24.9 |
| KRH53420 | Soybean | nucleus | 34.08 | 24.5 |
| Bra037569.1-P | Field mustard | nucleus | 29.61 | 24.42 |
| PGSC0003DMT400002024 | Potato | plastid | 36.31 | 23.55 |
| Bra001716.1-P | Field mustard | nucleus | 25.7 | 21.5 |
| Bra022345.1-P | Field mustard | nucleus | 25.7 | 21.3 |
| KRH64520 | Soybean | nucleus, plastid | 28.49 | 21.25 |
Protein Annotations
| EnsemblPlants:Bra012276.1 | EnsemblPlants:Bra012276.1-P | EnsemblPlantsGene:Bra012276 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 | SEG:seg |
| UniParc:UPI000254151C | UniProt:M4D716 | MapMan:35.1 | : | : | : |
Description
AT1G21326 (E=2e-047) | VQ motif-containing protein
Coordinates
chrA07:+:8888833..8889372
Molecular Weight (calculated)
19294.5 Da
IEP (calculated)
5.011
GRAVY (calculated)
-0.337
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSQQPRGPV IIYTVSPKII HTHPNNFMGL VQRLTGNTSA STASSSVSQS ILAPNNMSAT VDTSCSSLSP AARYAVMEKD NASNEVGFVG GVETTDQSYY
101: YHHHQNRVME IPNSYNGGIL PPDPTSLPLT SQELLSTVAP PNDPQGLSAM FSDFNSILQT SPPKIPSPSM DLFNNFFDS
101: YHHHQNRVME IPNSYNGGIL PPDPTSLPLT SQELLSTVAP PNDPQGLSAM FSDFNSILQT SPPKIPSPSM DLFNNFFDS
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.