Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00369 | Canola | nucleus | 97.01 | 97.01 |
| Bra012276.1-P | Field mustard | plastid | 71.79 | 93.85 |
| CDY04618 | Canola | nucleus | 60.26 | 61.3 |
| CDY50839 | Canola | nucleus | 58.55 | 59.57 |
| AT1G21326.1 | Thale cress | nucleus | 59.4 | 58.16 |
| KRH18125 | Soybean | nucleus | 37.18 | 36.25 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 37.61 | 34.92 |
| PGSC0003DMT400045282 | Potato | nucleus | 35.9 | 34.29 |
| KRH15991 | Soybean | nucleus | 34.62 | 34.18 |
| Solyc06g060470.1.1 | Tomato | nucleus | 34.19 | 33.33 |
| CDY68488 | Canola | nucleus | 29.91 | 32.26 |
| CDY71738 | Canola | nucleus | 29.91 | 32.26 |
| KRH53420 | Soybean | nucleus | 33.33 | 31.33 |
| CDX75979 | Canola | nucleus | 28.21 | 31.13 |
| CDX99326 | Canola | nucleus | 28.21 | 30.84 |
| CDX92261 | Canola | nucleus | 28.21 | 30.7 |
| PGSC0003DMT400002024 | Potato | plastid | 35.9 | 30.43 |
| CDX82333 | Canola | nucleus | 27.78 | 30.37 |
| KRH64520 | Soybean | nucleus, plastid | 29.49 | 28.75 |
Protein Annotations
| EnsemblPlants:CDY61066 | EnsemblPlantsGene:GSBRNA2T00030507001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 |
| ProteinID:CDY61066 | ProteinID:CDY61066.1 | SEG:seg | UniParc:UPI0004EEBA58 | UniProt:A0A078JAS1 | MapMan:35.1 |
Description
BnaA07g37320DBnaA07g37320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAS1]
Coordinates
chrLK033951:+:36623..37327
Molecular Weight (calculated)
25752.5 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.576
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNRWPKSKE ILGPRPPPLK IRKESHKIIK KPPLVPQPRL QPPEPAPPQL QHQEPMQSQQ PRGPVIIYTV SPKIIHTHPN NFMALVQRLT GNTSASTTSS
101: SASQSILAPN NMSATVDTSC SSLSPAARYV VMEKDNASNE VGFVGGVETT DQSYYYHHHQ NRVMEIPNSY NGGILPPDPT SLPLRSQELL STVAPPNDPQ
201: GLSALFSDFN SILQTSPPKI PSPSMDLFNN FFDS
101: SASQSILAPN NMSATVDTSC SSLSPAARYV VMEKDNASNE VGFVGGVETT DQSYYYHHHQ NRVMEIPNSY NGGILPPDPT SLPLRSQELL STVAPPNDPQ
201: GLSALFSDFN SILQTSPPKI PSPSMDLFNN FFDS
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.