Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04618 | Canola | nucleus | 65.27 | 67.83 |
| Bra025892.1-P | Field mustard | nucleus | 64.85 | 67.39 |
| CDY50839 | Canola | nucleus | 64.44 | 66.96 |
| Bra012276.1-P | Field mustard | plastid | 46.03 | 61.45 |
| CDY00369 | Canola | nucleus | 59.41 | 60.68 |
| CDY61066 | Canola | nucleus | 58.16 | 59.4 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 41.0 | 38.89 |
| KRH18125 | Soybean | nucleus | 38.08 | 37.92 |
| PGSC0003DMT400045282 | Potato | nucleus | 38.08 | 37.14 |
| KRH15991 | Soybean | nucleus | 36.4 | 36.71 |
| Solyc06g060470.1.1 | Tomato | nucleus | 35.98 | 35.83 |
| KRH53420 | Soybean | nucleus | 36.4 | 34.94 |
| PGSC0003DMT400002024 | Potato | plastid | 39.75 | 34.42 |
| AT3G18690.1 | Thale cress | nucleus | 30.96 | 33.33 |
| KRH64520 | Soybean | nucleus, plastid | 31.38 | 31.25 |
Protein Annotations
| ArrayExpress:AT1G21326 | EnsemblPlants:AT1G21326.1 | EnsemblPlantsGene:AT1G21326 | EntrezGene:838731 | GO:GO:0008150 | InterPro:VQ |
| PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 | PO:PO:0000293 | ProteinID:AAF81352.1 | ProteinID:AEE30087.1 |
| ProteinID:OAP15128.1 | RefSeq:AT1G21326 | RefSeq:AT1G21326-TAIR-G | RefSeq:NP_683319.1 | SEG:seg | TAIR:AT1G21326 |
| TAIR:AT1G21326.1 | UniParc:UPI00000A94EA | UniProt:A0A178W9U6 | UniProt:Q9LMP5 | MapMan:35.1 | : |
Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
Coordinates
chr1:-:7468765..7469995
Molecular Weight (calculated)
26290.6 Da
IEP (calculated)
9.404
GRAVY (calculated)
-0.740
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.