Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P13020_001 | Banana | nucleus | 63.9 | 56.22 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 50.24 | 47.47 |
| KRH64076 | Soybean | nucleus | 42.93 | 41.51 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 39.51 | 40.91 |
| KRH59551 | Soybean | plastid | 41.46 | 40.87 |
| AT3G18690.1 | Thale cress | nucleus | 42.44 | 39.19 |
| KRH53873 | Soybean | nucleus | 42.44 | 39.19 |
| CDX75979 | Canola | nucleus | 39.51 | 38.21 |
| Bra001716.1-P | Field mustard | nucleus | 39.51 | 37.85 |
| CDX82333 | Canola | nucleus | 39.51 | 37.85 |
| CDY68488 | Canola | nucleus | 40.0 | 37.79 |
| CDY71738 | Canola | nucleus | 40.0 | 37.79 |
| Bra037569.1-P | Field mustard | nucleus | 40.0 | 37.79 |
| CDX99326 | Canola | nucleus | 38.54 | 36.92 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 43.9 | 36.89 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 42.93 | 36.67 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 43.41 | 36.63 |
| CDX92261 | Canola | nucleus | 38.05 | 36.28 |
| Bra022345.1-P | Field mustard | nucleus | 38.05 | 36.11 |
| PGSC0003DMT400073800 | Potato | nucleus | 40.0 | 35.81 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 43.9 | 35.71 |
| Solyc11g005720.1.1 | Tomato | nucleus | 40.0 | 35.5 |
| Os02t0539500-01 | Rice | nucleus | 45.85 | 34.18 |
| Zm00001d016748_P001 | Maize | nucleus | 47.8 | 34.15 |
| Zm00001d025374_P001 | Maize | plastid | 39.02 | 30.08 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 27.8 | 29.23 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 43.9 | 27.36 |
| Zm00001d003743_P001 | Maize | nucleus | 41.95 | 27.3 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 43.41 | 27.05 |
| TraesCS2B01G314600.1 | Wheat | plastid | 43.41 | 27.05 |
| OQU81546 | Sorghum | nucleus | 43.41 | 25.28 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 39.51 | 19.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P09430_001 | EnsemblPlants:GSMUA_Achr10T09430_001 | EnsemblPlantsGene:GSMUA_Achr10G09430_001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000295B6ED | UniProt:M0RGR9 | MapMan:35.2 | : |
Description
VQ domain containing protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr10G09430_001]
Coordinates
chr10:+:19283971..19284588
Molecular Weight (calculated)
21753.0 Da
IEP (calculated)
9.683
GRAVY (calculated)
-0.196
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSESRPSP RRQVQGPRPT PLKVSKDSYK IKKPPVAPPP RVPLVIYAVS PKIIHAQPGE FMTLVQRLTG PSSSADPSLT GELSPAARIA AFERATPTHA
101: GDRAGTDGVD QLGIERWPTL DRPASFPGIL SPLPWALPPI SPKLFSPSFD PSVFSILQEL SPVIGSSSSS GGKAFLTSPS NSFLSTPIVP SPGACWDLLS
201: QFPDV
101: GDRAGTDGVD QLGIERWPTL DRPASFPGIL SPLPWALPPI SPKLFSPSFD PSVFSILQEL SPVIGSSSSS GGKAFLTSPS NSFLSTPIVP SPGACWDLLS
201: QFPDV
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.