Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049500.2 | |
| HORVU1Hr1G070250.2 | |
| HORVU3Hr1G088200.4 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G314600.1 | Wheat | plastid | 77.44 | 45.9 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 77.44 | 45.9 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 75.9 | 44.98 |
| Zm00001d025374_P001 | Maize | plastid | 52.82 | 38.72 |
| Zm00001d003743_P001 | Maize | nucleus | 54.87 | 33.97 |
| OQU81546 | Sorghum | nucleus | 55.9 | 30.97 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 37.44 | 30.42 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 34.36 | 28.76 |
| GSMUA_Achr10P... | Banana | nucleus | 29.23 | 27.8 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 48.72 | 22.84 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 22.56 | 22.22 |
| KRH64076 | Soybean | nucleus | 24.1 | 22.17 |
| KRH53873 | Soybean | nucleus | 25.13 | 22.07 |
| CDX75979 | Canola | nucleus | 22.56 | 20.75 |
| CDX99326 | Canola | nucleus | 22.56 | 20.56 |
| CDX92261 | Canola | nucleus | 22.56 | 20.47 |
| Bra022345.1-P | Field mustard | nucleus | 22.56 | 20.37 |
| CDY68488 | Canola | nucleus | 22.56 | 20.28 |
| CDX82333 | Canola | nucleus | 22.05 | 20.09 |
| Bra001716.1-P | Field mustard | nucleus | 22.05 | 20.09 |
| AT3G18690.1 | Thale cress | nucleus | 22.56 | 19.82 |
| Bra037569.1-P | Field mustard | nucleus | 22.05 | 19.82 |
| CDY71738 | Canola | nucleus | 21.54 | 19.35 |
| KRH59551 | Soybean | plastid | 20.51 | 19.23 |
| PGSC0003DMT400073800 | Potato | nucleus | 20.0 | 17.03 |
| Solyc11g005720.1.1 | Tomato | nucleus | 20.0 | 16.88 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G004060.1 | EnsemblPlantsGene:HORVU0Hr1G004060 | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | SEG:seg | UniParc:UPI0002950ADA |
| UniProt:M0XZU4 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:21413989..21414966
Molecular Weight (calculated)
20250.0 Da
IEP (calculated)
4.306
GRAVY (calculated)
-0.145
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVQRLTGP GSGALPSEAQ TQDYQMDEAM PGQSFLPPEL LLSPSAAMSP AARLATIERS VRPMPAPTPD YVDFNNYRFD DGGLAAVLGA VRPGPGILSP
101: LPSSLPPAAA SGLFSPLPFD PNGLSWLNEL SPILRAASTG AASPGSGGTS NGGAYRQPQS YYSDPFVPSP RNLLATPTVP SPRTFAELMS NLPDL
101: LPSSLPPAAA SGLFSPLPFD PNGLSWLNEL SPILRAASTG AASPGSGGTS NGGAYRQPQS YYSDPFVPSP RNLLATPTVP SPRTFAELMS NLPDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.