Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G314600.1 | Wheat | plastid | 97.26 | 97.26 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 91.19 | 91.19 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 45.9 | 77.44 |
| Zm00001d025374_P001 | Maize | plastid | 50.15 | 62.03 |
| Zm00001d003743_P001 | Maize | nucleus | 52.89 | 55.24 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 37.99 | 49.6 |
| OQU81546 | Sorghum | nucleus | 52.58 | 49.15 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 32.83 | 46.35 |
| GSMUA_Achr10P... | Banana | nucleus | 27.36 | 43.9 |
| KRH53873 | Soybean | nucleus | 27.05 | 40.09 |
| KRH64076 | Soybean | nucleus | 25.23 | 39.15 |
| CDX75979 | Canola | nucleus | 24.62 | 38.21 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 22.8 | 37.88 |
| CDX82333 | Canola | nucleus | 24.62 | 37.85 |
| Bra001716.1-P | Field mustard | nucleus | 24.62 | 37.85 |
| KRH59551 | Soybean | plastid | 23.71 | 37.5 |
| CDX99326 | Canola | nucleus | 24.01 | 36.92 |
| CDX92261 | Canola | nucleus | 24.01 | 36.74 |
| Bra022345.1-P | Field mustard | nucleus | 24.01 | 36.57 |
| CDY68488 | Canola | nucleus | 24.01 | 36.41 |
| Bra037569.1-P | Field mustard | nucleus | 24.01 | 36.41 |
| AT3G18690.1 | Thale cress | nucleus | 24.01 | 35.59 |
| CDY71738 | Canola | nucleus | 23.4 | 35.48 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 44.07 | 34.86 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 24.32 | 31.37 |
| PGSC0003DMT400073800 | Potato | nucleus | 20.67 | 29.69 |
| Solyc11g005720.1.1 | Tomato | nucleus | 20.67 | 29.44 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G298100.1 | EnsemblPlantsGene:TraesCS2A01G298100 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:513286394..513287383
Molecular Weight (calculated)
34793.4 Da
IEP (calculated)
10.357
GRAVY (calculated)
-0.498
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MWNRPHPLSH SRPGALSPLL RVLPRAVAGP PPPSEHDRIR VAPPPRMDAT SPSGRPTTPR RQLQLQGPRP PRLSVRPESH AIKKPSGAPP QAQGQGHARR
101: EEKQQGQPPR EPVIIYDASP KIIHTKPSEF MALVQRLTGP GSGALPSEAQ TQDYQMDEAV PGQSFLPPEL LLSPSAAMSP AARLATIERS VRPMPAPTPD
201: YVDFNNYRFD DGGLAAVLGA GRPGPGILSP LPSSLPPAAA SVLFSPLPFD PNGLSWLNEL SPILRAASTG AGSSGSGSGG GGTSNGGAYR QPQSYYSDPF
301: VPSPRNLLAT PTVPSPRTFA ELMSNLPDL
101: EEKQQGQPPR EPVIIYDASP KIIHTKPSEF MALVQRLTGP GSGALPSEAQ TQDYQMDEAV PGQSFLPPEL LLSPSAAMSP AARLATIERS VRPMPAPTPD
201: YVDFNNYRFD DGGLAAVLGA GRPGPGILSP LPSSLPPAAA SVLFSPLPFD PNGLSWLNEL SPILRAASTG AGSSGSGSGG GGTSNGGAYR QPQSYYSDPF
301: VPSPRNLLAT PTVPSPRTFA ELMSNLPDL
001: MIPTRCNEIN GSRPSSLKLA GESHTIKKTS SCKSKPRPHG RASPVIIYAH SPKVIHTRAE DFMALVQRLT GLDEIIRRNT SESSSSVVTE EVNVGDDNTA
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
Arabidopsis Description
VQ8VQ motif-containing protein 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.