Factsheet for Os02t0539500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0826400-01
Os05t0343400-01
Os05t0474800-01
Os10t0533600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18690.1	Os05t0343400-01	AT2G30250.1	15990873
AT3G18690.1	Os05t0343400-01	AT2G30250.1	21203436
AT3G18690.1	Os01t0826400-01	AT2G38470.1	15990873
AT3G18690.1	Os05t0474800-01	AT2G38470.1	15990873
AT3G18690.1	Os10t0533600-01	AT4G01370.1	15990873
AT3G18690.1	Os10t0533600-01	AT4G01370.1	21203436
AT3G18690.1	Os10t0533600-01	AT4G01370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016748_P001	Maize	nucleus	62.18	59.58
HORVU5Hr1G007670.2	Barley	nucleus	51.27	58.75
TraesCS5A01G027100.1	Wheat	nucleus	53.09	57.94
TraesCS5D01G034800.1	Wheat	nucleus	51.27	57.79
TraesCS5B01G026300.1	Wheat	nucleus	49.82	56.38
GSMUA_Achr10P...	Banana	nucleus	34.18	45.85
GSMUA_Achr6P13020_001	Banana	nucleus	34.18	40.34
KRH59551	Soybean	plastid	28.73	37.98
KRH43402	Soybean	cytosol, mitochondrion, nucleus, plastid	26.18	36.36
KRH64076	Soybean	nucleus	27.27	35.38
KRH53873	Soybean	nucleus	28.0	34.68
Solyc11g005720.1.1	Tomato	nucleus	28.73	34.2
PGSC0003DMT400073800	Potato	nucleus	28.36	34.06
CDX75979	Canola	nucleus	26.18	33.96
Bra001716.1-P	Field mustard	nucleus	26.18	33.64
CDX99326	Canola	nucleus	26.18	33.64
CDX82333	Canola	nucleus	26.18	33.64
CDY68488	Canola	nucleus	26.55	33.64
CDX92261	Canola	nucleus	26.18	33.49
Os08t0102900-00	Rice	nucleus	25.09	33.33
Bra022345.1-P	Field mustard	nucleus	26.18	33.33
AT3G18690.1	Thale cress	nucleus	26.55	32.88
CDY71738	Canola	nucleus	25.82	32.72
Bra037569.1-P	Field mustard	nucleus	25.82	32.72
Os04t0417600-00	Rice	cytosol, mitochondrion, nucleus	40.73	26.92

Protein Annotations

EMBL:AK243467	EnsemblPlants:Os02t0539500-01	EnsemblPlantsGene:Os02g0539500	EntrezGene:9268455	InterPro:VQ	PANTHER:PTHR33143
PANTHER:PTHR33143:SF1	PFAM:PF05678	ProteinID:BAD28841.1	ProteinID:BAH91741.1	ProteinID:BAS79090.1	RefSeq:XP_015623729.1
SEG:seg	UniParc:UPI00003CE805	UniProt:Q6ER79	MapMan:35.2	:	:

Description

VQ motif-containing protein 8VQ domain containing protein. (Os02t0539500-01)

Coordinates

chr2:+:20000799..20002297

Molecular Weight (calculated)

28383.6 Da

IEP (calculated)

9.548

GRAVY (calculated)

-0.090

Length

275 amino acids

Sequence
(BLAST)

001: MDASDGRPSP RSRQLQGPRP PRLAVSKDSH KVRKPPVVPQ PRGGGGVVAG PSRPQQQQQP RAPVIIYDAS PKVIHTRPSE FMALVQRLTG PGSAAVAAVA
101: APVAAGFHTE ASSSSSASAS ALPPQFQLPQ EFMLSPTAAL SPAARYAAIE RSVRPLPPTT AHYYTADADD PILLDVDGDA AAFAAALGPA RPSILSPVPS
201: ALPPAASSGL FSPLDQASLS WLSDLSPFLH SAGAAAAPPP PFAPSPRSLL LSTPTMPSPA TFSVMEFFSS NFPDL

Best Arabidopsis Sequence Match ( AT3G18690.1 )
(BLAST)

001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD

Arabidopsis Description

MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.