Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G227600.1 | Wheat | peroxisome | 95.28 | 94.9 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 75.59 | 75.29 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 37.4 | 43.78 |
| Os08t0102900-00 | Rice | nucleus | 35.43 | 43.48 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 50.0 | 39.2 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 30.32 | 38.89 |
| KRH64076 | Soybean | nucleus | 31.5 | 37.74 |
| KRH59551 | Soybean | plastid | 30.71 | 37.5 |
| CDX75979 | Canola | nucleus | 31.1 | 37.26 |
| CDX99326 | Canola | nucleus | 31.1 | 36.92 |
| AT3G18690.1 | Thale cress | nucleus | 31.89 | 36.49 |
| CDX92261 | Canola | nucleus | 30.71 | 36.28 |
| Bra022345.1-P | Field mustard | nucleus | 30.71 | 36.11 |
| CDX82333 | Canola | nucleus | 30.32 | 35.98 |
| Bra001716.1-P | Field mustard | nucleus | 30.32 | 35.98 |
| Bra037569.1-P | Field mustard | nucleus | 30.32 | 35.48 |
| CDY71738 | Canola | nucleus | 29.92 | 35.02 |
| CDY68488 | Canola | nucleus | 29.92 | 35.02 |
| PGSC0003DMT400073800 | Potato | nucleus | 31.5 | 34.93 |
| Solyc11g005720.1.1 | Tomato | nucleus | 31.1 | 34.2 |
| KRH53873 | Soybean | nucleus | 29.53 | 33.78 |
| EES13183 | Sorghum | nucleus, plastid | 41.34 | 33.33 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 29.13 | 30.33 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 30.32 | 23.4 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G323700.1 | EnsemblPlantsGene:TraesCS7D01G323700 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF7 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:413441710..413442474
Molecular Weight (calculated)
26251.1 Da
IEP (calculated)
10.026
GRAVY (calculated)
-0.280
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEYSASSSQ RGGGGGRGEL QGPRPAPLRV HKDSHKIKKP PASQVRQPVI IYTVSPKVVH ANPGEFMSVV QRLTGASSSS SSLPPPPQPS LPFPFFPQQS
101: SSSMLPPALP QTLPFPFQLQ ASGPQAHEGA LLQHQHSPAA RLAAFEQASA PAGRSTGVHR GGLPPLPGIL SPVPGSLPAI PPGFFSPPPG GAGGGINLFG
201: ELISPAFHGH GALTGTTAGA SPTPMSLQYF PAAAAPSPST PYYWDLFNND PNHL
101: SSSMLPPALP QTLPFPFQLQ ASGPQAHEGA LLQHQHSPAA RLAAFEQASA PAGRSTGVHR GGLPPLPGIL SPVPGSLPAI PPGFFSPPPG GAGGGINLFG
201: ELISPAFHGH GALTGTTAGA SPTPMSLQYF PAAAAPSPST PYYWDLFNND PNHL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.