Factsheet for VIT_08s0058g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0104g01780.t01
VIT_07s0104g01790.t01
VIT_15s0046g02010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	VIT_07s0104g01780.t01	AT3G62770.1	21395886
AT2G38470.1	VIT_07s0104g01790.t01	AT3G62770.1	21395886
AT2G38470.1	VIT_15s0046g02010.t01	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07500.t01	Wine grape	nucleus	61.96	56.72
Solyc09g014990.2.1	Tomato	nucleus	50.36	52.55
PGSC0003DMT400030388	Potato	nucleus	38.59	52.21
Bra005104.1-P	Field mustard	nucleus	43.12	52.08
CDY65564	Canola	nucleus, plastid	43.48	50.96
CDX91470	Canola	nucleus, plastid	43.48	50.42
CDY07729	Canola	nucleus	41.85	48.84
Bra017117.1-P	Field mustard	nucleus	40.94	48.81
Bra000064.1-P	Field mustard	nucleus	41.67	48.63
CDY14459	Canola	nucleus, plastid	42.39	47.76
CDY69941	Canola	nucleus, plastid	41.12	47.59
CDY18383	Canola	nucleus, plastid	41.3	47.4
AT2G38470.1	Thale cress	nucleus, plastid	43.84	46.63
CDY48650	Canola	nucleus, plastid	34.78	43.34
VIT_01s0011g00220.t01	Wine grape	nucleus	30.07	33.07
VIT_08s0040g03070.t01	Wine grape	nucleus	27.72	32.08
VIT_14s0108g01280.t01	Wine grape	nucleus	29.89	31.31
VIT_12s0057g00550.t01	Wine grape	nucleus	21.92	30.02
VIT_19s0090g01720.t01	Wine grape	nucleus	31.88	29.83
VIT_04s0023g00470.t01	Wine grape	nucleus	25.0	27.49
VIT_19s0015g01870.t01	Wine grape	nucleus	36.41	26.94
VIT_00s0463g00010.t01	Wine grape	nucleus	29.71	26.8
VIT_04s0008g06600.t01	Wine grape	nucleus	21.56	24.24
VIT_11s0037g00150.t01	Wine grape	nucleus	20.11	22.24

Protein Annotations

EntrezGene:100246612	wikigene:100246612	EntrezGene:109123048	MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1
ProteinID:CCB44804	ProteinID:CCB44804.1	UniProt:F6GXS4	EMBL:FN594967	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009408	GO:GO:0009409
GO:GO:0009414	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009987	GO:GO:0010120	GO:GO:0010200	GO:GO:0010508	GO:GO:0019748	GO:GO:0034605
GO:GO:0042742	GO:GO:0043565	GO:GO:0044212	GO:GO:0050832	GO:GO:0070370	InterPro:IPR003657
InterPro:IPR036576	EntrezGene:LOC100246612	wikigene:LOC100246612	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC59548	UniParc:UPI0001983D64	ArrayExpress:VIT_08s0058g00690
EnsemblPlantsGene:VIT_08s0058g00690	EnsemblPlants:VIT_08s0058g00690.t01	unigene:Vvi.10153	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002264974
RefSeq:XP_002264974.1	RefSeq:XP_019077410.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:9796097..9798804

Molecular Weight (calculated)

61003.9 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.895

Length

552 amino acids

Sequence
(BLAST)

001: MASSAASFNT SSHNSQDDFS FSTQLMSSSF TDLLSSGGDM DHSAPFAWAL SDPLSHTTEF PKFKSLPPPS LPISPPPVSP SSYFAFSSGF SSTDLLDSPL
101: LLSSSNVLPS PITGNFAAPG FNWRSNSNEH QQAFNDTDRK FSDLLFQSQT RPSGGEALKT QAPWNSDKPE KQTHFPQEKT GVKSEFASLQ SLSPEIASIQ
201: TNMQSNNIPQ SGRSHHAQPS ESYREQRRSD DGYNWRKYGQ KQVKGSENPR SYYKCTFPNC PTKKKVERSL EGHITEIVYK GTHSHPKPQP KRSSSQSFPS
301: ASTNSEISGH SMPIGNPYMD SMTTSENSSV SIGEDDFDQN SPMSRSGGDD ENEREAKRWK GEYENEAISA SESRTVKEPR VVVQTTSDID ILDDGYRWRK
401: YGQKVVKGNP NPRSYYKCTS IGCPVRKHVE RSSKDIRAVL TTYEGKHNHD VPAARGSGSH FVTKPLPNNS TTTVPAPIRP SVMTNHSNYT TTNANPQTRP
501: PTSASQAPFT LEMLQSPGSF GFSGFGRMSH PDGVFSRTKE EPKDDLFQSF FC

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.