Factsheet for VIT_12s0057g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93073	Canola	nucleus	34.99	38.32
Solyc12g006170.1.1	Tomato	nucleus	38.71	37.59
Solyc07g047960.2.1	Tomato	nucleus	37.47	36.56
PGSC0003DMT400015754	Potato	nucleus	38.21	36.49
KRH74020	Soybean	nucleus	45.41	36.09
KRH14103	Soybean	nucleus	45.41	36.02
CDY50038	Canola	nucleus	37.97	35.09
Bra013187.1-P	Field mustard	nucleus	36.97	33.33
GSMUA_Achr7P25840_001	Banana	nucleus	20.1	32.79
AT2G04880.1	Thale cress	nucleus	38.21	31.62
PGSC0003DMT400074158	Potato	nucleus	42.18	30.97
GSMUA_Achr4P13970_001	Banana	nucleus	33.0	25.93
VIT_01s0011g00220.t01	Wine grape	nucleus	31.02	24.9
VIT_19s0090g01720.t01	Wine grape	nucleus	35.73	24.41
VIT_14s0108g01280.t01	Wine grape	nucleus	31.27	23.91
VIT_00s0463g00010.t01	Wine grape	nucleus	35.98	23.69
GSMUA_Achr3P29850_001	Banana	nucleus	33.5	23.44
VIT_08s0040g03070.t01	Wine grape	nucleus	27.05	22.85
KXG36569	Sorghum	nucleus	33.99	22.42
Zm00001d021947_P002	Maize	nucleus	33.99	22.35
VIT_04s0023g00470.t01	Wine grape	nucleus	27.79	22.31
Zm00001d006702_P001	Maize	nucleus	33.5	22.13
VIT_08s0058g00690.t01	Wine grape	nucleus	30.02	21.92
VIT_06s0004g07500.t01	Wine grape	nucleus	32.75	21.89
Os07t0583700-01	Rice	nucleus	33.5	21.84
HORVU2Hr1G036320.1	Barley	nucleus	32.75	21.46
TraesCS2A01G189700.1	Wheat	nucleus	32.51	21.41
TraesCS2B01G217400.2	Wheat	nucleus	32.51	21.34
TraesCS2D01G198100.4	Wheat	nucleus	32.26	20.38
VIT_04s0008g06600.t01	Wine grape	nucleus	24.32	19.96
VIT_11s0037g00150.t01	Wine grape	nucleus	22.83	18.44
VIT_19s0015g01870.t01	Wine grape	nucleus	32.51	17.56

Protein Annotations

EntrezGene:100256306	wikigene:100256306	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM480933	ProteinID:CAN73009
ProteinID:CAN73009.1	ProteinID:CCB51714	ProteinID:CCB51714.1	UniProt:F6HHL8	EMBL:FN595759	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009719
GO:GO:0009863	GO:GO:0009987	GO:GO:0043565	GO:GO:0045893	InterPro:IPR003657	InterPro:IPR036576
EntrezGene:LOC100256306	wikigene:LOC100256306	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	TIGR:TC67321	UniParc:UPI0002108AA2	ArrayExpress:VIT_12s0057g00550	EnsemblPlantsGene:VIT_12s0057g00550
EnsemblPlants:VIT_12s0057g00550.t01	unigene:Vvi.1954	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002272407	RefSeq:XP_002272407.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:9116720..9122740

Molecular Weight (calculated)

44393.0 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.917

Length

403 amino acids

Sequence
(BLAST)

001: MEGVQDDVAS DKLQQRQSLN AGVNASQSVQ EVTDPIIPEK ASEAELNPSF AASSSQVDMG TSGEGAADDV DSNKLQQRQI PDTGVHASQS HQEAIMPSII
101: PEKASEDGYN WRKYGQKHVK GNEFIRSYYR CTHPNCQVKK QLERSHDGQI TDIIYFGKHD HPKLQVDLPL AVGLVVPVQE ERPKEPSSTV VEEKSLDGDG
201: QTSCQIEPVD APQPAIAVSD DCVDRALAVW SRTRDETDND DDPDSKRQKK DINNVDATPT DKPSGEPRIV VQTVSEVDIV NDGYRWRKYG QKLVKGNTNP
301: RSYYRCSNAG CPVKKHVERA SHDPKMVITT YEGQHDHDMP PARTVTHNSA GPNTTTTDVN DESRAKSEQS DNVGLAIVPY ICLGPENNKS NDQQTPSAEP
401: VQT

Best Arabidopsis Sequence Match ( AT4G26640.1 )
(BLAST)

001: MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT
101: PPCQMTPTSS DIPAGSDQEE SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITDIIYKG THDHPKPQPG
201: RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ
301: TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS
401: DGPNHASNEH QHQNQQLVNQ THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR VQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.