Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97359 | Canola | nucleus | 81.15 | 84.17 |
| Bra010431.1-P | Field mustard | nucleus | 82.23 | 84.04 |
| CDY14304 | Canola | nucleus | 82.23 | 83.73 |
| CDX94303 | Canola | nucleus | 79.53 | 83.27 |
| Bra026414.1-P | Field mustard | nucleus | 79.89 | 83.18 |
| CDX89317 | Canola | nucleus | 79.71 | 83.15 |
| CDX92808 | Canola | nucleus | 77.56 | 82.44 |
| CDY46692 | Canola | nucleus | 77.02 | 81.71 |
| Bra019095.1-P | Field mustard | nucleus | 77.02 | 56.9 |
| VIT_19s0090g01720.t01 | Wine grape | nucleus | 55.3 | 52.2 |
| Solyc12g014610.1.1 | Tomato | nucleus | 50.27 | 45.83 |
| PGSC0003DMT400076670 | Potato | nucleus | 49.73 | 45.34 |
| GSMUA_Achr7P25840_001 | Banana | nucleus | 19.93 | 44.94 |
| AT5G07100.1 | Thale cress | nucleus | 24.78 | 44.66 |
| GSMUA_Achr4P13970_001 | Banana | nucleus | 40.4 | 43.86 |
| PGSC0003DMT400057409 | Potato | nucleus | 46.32 | 43.29 |
| Solyc07g065260.2.1 | Tomato | nucleus | 46.14 | 43.12 |
| KRH49522 | Soybean | extracellular, plasma membrane | 18.31 | 40.48 |
| Os07t0583700-01 | Rice | nucleus | 44.52 | 40.13 |
| GSMUA_Achr3P29850_001 | Banana | nucleus | 40.57 | 39.24 |
| Zm00001d021947_P002 | Maize | nucleus | 42.91 | 38.99 |
| KXG36569 | Sorghum | nucleus | 42.37 | 38.63 |
| Zm00001d006702_P001 | Maize | nucleus | 42.01 | 38.36 |
| AT2G30250.1 | Thale cress | nucleus | 24.78 | 35.11 |
| AT1G13960.1 | Thale cress | nucleus | 29.8 | 32.3 |
| AT3G01080.2 | Thale cress | nucleus | 26.57 | 32.1 |
| AT2G38470.1 | Thale cress | nucleus, plastid | 28.9 | 31.02 |
| AT2G03340.1 | Thale cress | nucleus | 28.19 | 30.6 |
| TraesCS2A01G189700.1 | Wheat | nucleus | 32.5 | 29.58 |
| TraesCS2B01G217400.2 | Wheat | nucleus | 32.5 | 29.48 |
| HORVU2Hr1G036320.1 | Barley | nucleus | 32.5 | 29.43 |
| AT4G26440.1 | Thale cress | nucleus | 29.62 | 29.05 |
| TraesCS2D01G198100.4 | Wheat | nucleus | 32.14 | 28.06 |
| AT2G37260.1 | Thale cress | nucleus | 21.36 | 27.74 |
| AT5G56270.1 | Thale cress | nucleus | 31.42 | 25.47 |
| AT2G04880.1 | Thale cress | nucleus | 21.36 | 24.44 |
| AT4G30935.1 | Thale cress | nucleus | 16.34 | 19.53 |
| AT1G55600.1 | Thale cress | nucleus | 16.34 | 18.76 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:828771 | ProteinID:AEE85230.1 | ProteinID:AEE85231.1 | EMBL:AF425837 |
| EMBL:AJ630479 | ProteinID:ANM67406.1 | ProteinID:ANM67407.1 | ProteinID:ANM67408.1 | ProteinID:ANM67409.1 | ProteinID:ANM67410.1 |
| ArrayExpress:AT4G26640 | EnsemblPlantsGene:AT4G26640 | RefSeq:AT4G26640 | TAIR:AT4G26640 | RefSeq:AT4G26640-TAIR-G | EnsemblPlants:AT4G26640.2 |
| TAIR:AT4G26640.2 | EMBL:AY045892 | EMBL:AY150436 | EMBL:AY568651 | Unigene:At.3375 | ProteinID:CAB43860.1 |
| ProteinID:CAB79519.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 |
| GO:GO:0009719 | GO:GO:0009961 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045893 | InterPro:IPR003657 |
| InterPro:IPR036576 | RefSeq:NP_001329238.1 | RefSeq:NP_001329239.1 | RefSeq:NP_001329240.1 | RefSeq:NP_001329241.1 | RefSeq:NP_001329242.1 |
| RefSeq:NP_567752.1 | RefSeq:NP_849450.1 | PFAM:PF03106 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF1 |
| UniProt:Q6H942 | UniProt:Q93WV0 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0000138F7E | Symbol:WRKY20 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
Coordinates
chr4:-:13437005..13440996
Molecular Weight (calculated)
61037.0 Da
IEP (calculated)
7.245
GRAVY (calculated)
-1.032
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.