Factsheet for AT1G55600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10548	Canola	nucleus	48.66	54.76
CDY59057	Canola	nucleus	50.31	54.59
Bra030847.1-P	Field mustard	nucleus	50.31	54.59
Bra037106.1-P	Field mustard	nucleus	47.42	53.24
CDY08253	Canola	nucleus	45.36	52.88
CDY26094	Canola	nucleus	44.95	52.4
CDY47546	Canola	nucleus	39.79	49.11
CDY47543	Canola	nucleus	24.54	42.05
CDY54360	Canola	nucleus	44.95	39.21
CDY67588	Canola	nucleus	41.65	39.15
Bra038006.1-P	Field mustard	nucleus	44.33	32.87
AT5G07100.1	Thale cress	nucleus	14.85	23.3
AT2G30250.1	Thale cress	nucleus	16.29	20.1
AT4G26440.1	Thale cress	nucleus	22.89	19.54
AT1G13960.1	Thale cress	nucleus	20.41	19.26
AT5G56270.1	Thale cress	nucleus	27.01	19.07
AT2G03340.1	Thale cress	nucleus	20.0	18.91
AT2G38470.1	Thale cress	nucleus, plastid	19.59	18.3
AT3G01080.2	Thale cress	nucleus	17.11	18.0
KRH34226	Soybean	nucleus	11.55	16.67
AT4G26640.2	Thale cress	nucleus	18.76	16.34
KRH34224	Soybean	nucleus	11.96	15.8
AT2G37260.1	Thale cress	nucleus	13.2	14.92
AT2G04880.1	Thale cress	nucleus	13.61	13.55
AT4G30935.1	Thale cress	nucleus	11.55	12.02

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:842009	ProteinID:AAF79511.1	ProteinID:AEE33270.1	ArrayExpress:AT1G55600
EnsemblPlantsGene:AT1G55600	RefSeq:AT1G55600	TAIR:AT1G55600	RefSeq:AT1G55600-TAIR-G	EnsemblPlants:AT1G55600.1	TAIR:AT1G55600.1
EMBL:AY071851	Unigene:At.42934	EMBL:DQ446362	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009960	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	RefSeq:NP_175956.1	PFAM:PF03106	PO:PO:0000198
PO:PO:0001185	PO:PO:0004507	PO:PO:0009001	PO:PO:0025281	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF46	UniProt:Q9LG05	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00000A020A	Symbol:WRKY10
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

WRKY10Probable WRKY transcription factor 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LG05]

Coordinates

chr1:-:20774046..20776294

Molecular Weight (calculated)

54554.5 Da

IEP (calculated)

4.009

GRAVY (calculated)

-0.851

Length

485 amino acids

Sequence
(BLAST)

001: MSDFDENFIE MTSYWAPPSS PSPRTILAML EQTDNGLNPI SEIFPQESLP RDHTDQSGQR SGLRERLAAR VGFNLPTLNT EENMSPLDAF FRSSNVPNSP
101: VVAISPGFSP SALLHTPNMV SDSSQIIPPS SATNYGPLEM VETSGEDNAA MMMFNNDLPY QPYNVDLPSL EVFDDIATEE SFYIPSYEPH VDPIGTPLVT
201: SFESELVDDA HTDIISIEDS ESEDGNKDDD DEDFQYEDED EDQYDQDQDV DEDEEEEKDE DNVALDDPQP PPPKRRRYEV SNMIGATRTS KTQRIILQME
301: SDEDNPNDGY RWRKYGQKVV KGNPNPRSYF KCTNIECRVK KHVERGADNI KLVVTTYDGI HNHPSPPARR SNSSSRNRSA GATIPQNQND RTSRLGRAPP
401: TPTPPTPPPS SYTPEEMRPF SSLATEIDLT EVYMTGISML PNIPVYENSG FMYQNDEPTM NAMPDGSDVY DGIMERLYFK FGVDM

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.