CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47543	Canola	nucleus	53.69	74.56
CDY62293	Canola	nucleus	24.43	47.29
CDY26094	Canola	nucleus	48.85	46.15
CDY08253	Canola	nucleus	47.84	45.19
CDY10548	Canola	nucleus	47.84	43.62
CDY59057	Canola	nucleus	48.6	42.73
CDY62292	Canola	nucleus	21.63	40.87
AT1G55600.1	Thale cress	nucleus	49.11	39.79
CDY72350	Canola	nucleus	13.49	36.55
CDY54360	Canola	nucleus	45.04	31.83
CDY67588	Canola	nucleus	40.97	31.2
CDY02051	Canola	nucleus	18.07	25.63
CDY29685	Canola	nucleus	19.08	21.43
CDX97834	Canola	nucleus	19.08	20.78
CDY10720	Canola	nucleus	19.59	20.64
CDY14055	Canola	nucleus	16.29	20.06
CDY05016	Canola	nucleus	16.29	20.06
CDY24017	Canola	nucleus	18.32	19.05
CDX84848	Canola	nucleus	18.07	18.78
CDX91470	Canola	nucleus, plastid	20.87	17.23
CDY65564	Canola	nucleus, plastid	20.61	17.2
CDX94335	Canola	nucleus	22.14	16.93
CDY18383	Canola	nucleus, plastid	20.36	16.63
CDY62213	Canola	nucleus	19.59	16.59
CDY69941	Canola	nucleus, plastid	20.1	16.56
CDY07729	Canola	nucleus	19.85	16.49
CDY36419	Canola	nucleus	19.08	16.48
CDY42736	Canola	nucleus	22.14	16.45
CDX98138	Canola	nucleus	19.08	16.41
CDY45169	Canola	nucleus	20.1	16.26
CDY69527	Canola	nucleus	22.39	16.21
CDY03003	Canola	nucleus	20.1	16.16
CDX79729	Canola	nucleus	13.23	16.15
CDY53941	Canola	nucleus	18.07	16.14
CDY46768	Canola	nucleus	13.23	16.1
CDY46769	Canola	nucleus	13.23	16.1
CDY11947	Canola	nucleus	23.41	16.03
CDY48650	Canola	nucleus, plastid	18.07	16.03
CDY14459	Canola	nucleus, plastid	19.85	15.92
CDY70490	Canola	nucleus	20.87	15.83
CDY32799	Canola	nucleus	24.17	15.81
CDX89336	Canola	nucleus	21.37	15.73
CDX96873	Canola	nucleus	18.58	15.67
CDY36788	Canola	nucleus	24.68	15.54
CDY37191	Canola	nucleus	19.08	15.43
CDX74281	Canola	nucleus	17.3	15.08
CDX92808	Canola	nucleus	19.85	14.89
CDY49388	Canola	nucleus	25.19	14.75
CDY14304	Canola	nucleus	20.36	14.63
KRH34226	Soybean	nucleus	12.47	14.58
CDY46692	Canola	nucleus	19.08	14.29
CDY16122	Canola	nucleus	16.29	14.29
CDX94303	Canola	nucleus	19.34	14.29
CDY33788	Canola	nucleus	16.03	14.25
CDX97359	Canola	nucleus	19.34	14.15
CDX93073	Canola	nucleus	13.23	14.13
CDX89317	Canola	nucleus	19.08	14.04
CDY50038	Canola	nucleus	14.5	13.07
CDX74976	Canola	nucleus	13.23	13.07
CDX91348	Canola	nucleus	13.23	12.94
KRH34224	Soybean	nucleus	11.96	12.81
CDY36463	Canola	nucleus	12.98	12.78
CDY52777	Canola	nucleus, plastid	5.34	12.28
CDY23265	Canola	nucleus	12.98	11.16
CDY13396	Canola	nucleus	13.49	9.98
CDX72277	Canola	nucleus	12.72	6.82

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078ICH2	UniProt:A0A078ICH2	EnsemblPlants:CDY47546	ProteinID:CDY47546
ProteinID:CDY47546.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00087621001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF46	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EEF515	InterPro:WRKY_dom	InterPro:WRKY_dom_sf

Description

BnaC03g69160DBnaC03g69160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICH2]

Coordinates

chrLK032720:-:164089..165808

Molecular Weight (calculated)

43019.1 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.625

Length

393 amino acids

Sequence
(BLAST)

001: MSDCDGNFMD DFSPLTSPRI RDALAMLDQN DNGLNSISET FPQTNIPPDP QSEQRSGGLR DRMAAKLGFD IPPLEIGRVS PSANLFSNPI LVSSPILVIS
101: PGFSLSPFLQ SPNMLSNSSS QIVPPCPIPN DAPPETVESS GDAHATMIIS NNNLPHQPIE VDLPPQGGSD DIPTENSGAP LVPSFDSEVV AEADVVNPIS
201: LESGSKDDNK DKEYNQEEDK VEDHNVVVEP PSRKRKSQVN IKENMVSNII GVTRLNKTQR VIIQVESEED HPDDGFRWRK YGQKVVTGNA NPRSYYRCTY
301: TGCEVKKLVE KNVDNVKLVV ATYDGIHEHV PPPERIRKSS AKNQSGSSIS QDPTLGLGIL PVNQNHGSVN RDDETMTDRV ISDGTEVYKA IRD

Best Arabidopsis Sequence Match ( AT1G55600.1 )
(BLAST)

001: MSDFDENFIE MTSYWAPPSS PSPRTILAML EQTDNGLNPI SEIFPQESLP RDHTDQSGQR SGLRERLAAR VGFNLPTLNT EENMSPLDAF FRSSNVPNSP
101: VVAISPGFSP SALLHTPNMV SDSSQIIPPS SATNYGPLEM VETSGEDNAA MMMFNNDLPY QPYNVDLPSL EVFDDIATEE SFYIPSYEPH VDPIGTPLVT
201: SFESELVDDA HTDIISIEDS ESEDGNKDDD DEDFQYEDED EDQYDQDQDV DEDEEEEKDE DNVALDDPQP PPPKRRRYEV SNMIGATRTS KTQRIILQME
301: SDEDNPNDGY RWRKYGQKVV KGNPNPRSYF KCTNIECRVK KHVERGADNI KLVVTTYDGI HNHPSPPARR SNSSSRNRSA GATIPQNQND RTSRLGRAPP
401: TPTPPTPPPS SYTPEEMRPF SSLATEIDLT EVYMTGISML PNIPVYENSG FMYQNDEPTM NAMPDGSDVY DGIMERLYFK FGVDM

Arabidopsis Description

WRKY10Probable WRKY transcription factor 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LG05]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.