Factsheet for TraesCS2D01G332300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS7A01G111300.1
TraesCS7B01G009200.1
TraesCS7D01G106400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	TraesCS7A01G111300.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7B01G009200.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7D01G106400.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS4A01G106400.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4B01G197800.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4D01G198600.1	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G351600.1	Wheat	nucleus	96.46	97.12
TraesCS2A01G330500.1	Wheat	nucleus	95.92	95.92
HORVU0Hr1G004890.10	Barley	nucleus	75.92	92.69
Zm00001d025669_P001	Maize	nucleus	57.96	64.25
Zm00001d003331_P001	Maize	nucleus	60.27	63.02
KXG26525	Sorghum	nucleus	61.5	61.08
GSMUA_Achr5P23900_001	Banana	nucleus	36.73	47.79
GSMUA_Achr6P03500_001	Banana	nucleus	33.33	47.57
Bra028939.1-P	Field mustard	nucleus	27.76	45.43
GSMUA_Achr5P04150_001	Banana	nucleus	37.82	43.92
GSMUA_Achr11P...	Banana	nucleus	38.37	43.59
GSMUA_Achr4P01600_001	Banana	nucleus	39.46	43.54
CDY11947	Canola	nucleus	33.2	42.51
CDY36788	Canola	nucleus	35.1	41.35
TraesCS5D01G266300.1	Wheat	nucleus	37.69	40.86
Os04t0471700-00	Rice	nucleus	54.83	40.38
Bra002828.1-P	Field mustard	nucleus	36.6	39.97
CDY49388	Canola	nucleus	36.46	39.94
CDX94335	Canola	nucleus	27.48	39.3
AT5G56270.1	Thale cress	nucleus	36.6	39.16
CDX89336	Canola	nucleus	28.44	39.14
Bra026438.1-P	Field mustard	nucleus	28.44	39.14
TraesCS7D01G239800.2	Wheat	nucleus	33.2	38.85
CDY69527	Canola	nucleus	28.03	37.94
CDY42736	Canola	nucleus	27.21	37.81
Bra019105.1-P	Field mustard	nucleus	27.21	37.81
AT4G26440.1	Thale cress	nucleus	28.57	36.97
CDY32799	Canola	nucleus	29.8	36.44
TraesCS1D01G072900.1	Wheat	nucleus	22.59	35.78
TraesCS3D01G341100.1	Wheat	nucleus	24.76	32.44
TraesCS5D01G116100.1	Wheat	nucleus	21.63	31.99
VIT_19s0015g01870.t01	Wine grape	nucleus	32.24	31.77
KRH62550	Soybean	nucleus	32.52	31.41
TraesCS1D01G292700.1	Wheat	nucleus, plastid	21.5	31.16
TraesCS5D01G406500.1	Wheat	nucleus	17.41	30.48
KRH56379	Soybean	nucleus	31.84	30.15
TraesCS4D01G151700.1	Wheat	nucleus	19.73	29.9
TraesCS2D01G198100.4	Wheat	nucleus	24.35	28.06
TraesCS2D01G190500.1	Wheat	nucleus	16.6	26.64
PGSC0003DMT400029328	Potato	nucleus	24.49	25.82
Solyc10g005680.1.1	Tomato	nucleus	23.67	24.75
TraesCS7D01G287200.1	Wheat	nucleus	17.55	24.71

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2D01G332300	EnsemblPlants:TraesCS2D01G332300.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:425215539..425220579

Molecular Weight (calculated)

77484.8 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.708

Length

735 amino acids

Sequence
(BLAST)

001: MDGHTHLAME WKDQSPGPDC SMLPSFLTDP FPADPLVEDC DGGNDGSEGG GFERHGLSVA VGSPQEEGKP VTPHFGQRSS SSSSLSERMQ ARAGFSVAKL
101: SMPGSEYSGA QSPYLTIPPG LSPASLLESP VFLSNAMGQS SPTTGKLLML GDTNNNNNAR LEPPSVEDGP RAFSFKALDL KSSQYTAEGK KGSLPNSQHP
201: SAPSRDVPVK TETNIQTTTQ GANPLGHLNQ AQLNNGQDLM KRSYHDCNNK RNRLAADSAT AGGDNNASPT PPATAVDSEA AKGDYPAAVA TAAPAEDGYS
301: WRKYGQKQVK HSEYPRSYYK CTHPSCQVKK KVERSHEGHV TEIIYKGTHN HPRPAAQSRR PAGGAQVHPF NDAQMDAPAD NNNNGYGNAG GSQPNAEARS
401: LWHAGVAVQD WRGDGLEATS PPSVPGELCD SSASMQVHDG AARFESPEGG VDVTSAVSDE VDGDDRVAHG SMSQGQGAAD TTEGDELESK RRKLDSCAID
501: MSTASRAVRE PRVVIQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THPGCSVRKH VERASHDLKS VITTYEGKHN HEVPVARNGG HGSSAASGGT
601: GASQLSHARR AEPPSVQDGL MRLGGCGAPF GLPPRDPLGP MSNYPYSLGG GHPGLPSLPM PSGLGAVEGL KLPMLSPSLH SVFRQRQAME TAAGFRVPKG
701: EVKDEAAGAG AGAGGGAAAA AYPQMMNRLP LGHRM

Best Arabidopsis Sequence Match ( AT4G26440.1 )
(BLAST)

001: MAGIDNKAAV MGEWFDCSTT NHRKRSKAEL GREFSLNYIK NEDSLQTTFQ ESSRGALRER IAARSGFNAP WLNTEDILQS KSLTISSPGL SPATLLESPV
101: FLSNPLLSPT TGKLSSVPSD KAKAELFDDI TTSLAFQTIS GSGLDPTNIA LEPDDSQDYE ERQLGGLGDS MACCAPADDG YNWRKYGQKL VKGSEYPRSY
201: YKCTHPNCEA KKKVERSREG HIIEIIYTGD HIHSKPPPNR RSGIGSSGTG QDMQIDATEY EGFAGTNENI EWTSPVSAEL EYGSHSGSMQ VQNGTHQFGY
301: GDAAADALYR DENEDDRTSH MSVSLTYDGE VEESESKRRK LEAYATETSG STRASREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTAN
401: GCTVTKHVER ASDDFKSVLT TYIGKHTHVV PAARNSSHVG AGSSGTLQGS LATQTHNHNV HYPMPHSRSE GLATANSSLF DFQSHLRHPT GFSVYIGQSE
501: LSDLSMPGLT IGQEKLTSLQ APDIGDPTGL MLQLAAQPKV EPVSPQQGLD LSASSLICRE MLSRLRQI

Arabidopsis Description

WRKY34Probable WRKY transcription factor 34 [Source:UniProtKB/Swiss-Prot;Acc:O65590]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.