Factsheet for TraesCS7D01G239800.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS7A01G111300.1
TraesCS7B01G009200.1
TraesCS7D01G106400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	TraesCS7A01G111300.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7B01G009200.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7D01G106400.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS4A01G106400.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4B01G197800.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4D01G198600.1	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G136400.2	Wheat	nucleus, plastid	93.31	92.58
TraesCS7A01G240800.1	Wheat	nucleus	93.79	90.48
HORVU7Hr1G049130.1	Barley	nucleus, plastid	31.37	80.41
Os08t0499300-01	Rice	nucleus	57.48	53.56
OQU80981	Sorghum	nucleus	55.41	50.8
TraesCS5D01G266300.1	Wheat	nucleus	50.96	47.2
Zm00001d052847_P001	Maize	nucleus	53.18	45.82
GSMUA_Achr5P23900_001	Banana	nucleus	35.67	39.65
GSMUA_Achr6P03500_001	Banana	nucleus	31.53	38.45
Bra028939.1-P	Field mustard	nucleus	27.39	38.31
GSMUA_Achr11P...	Banana	nucleus	39.17	38.02
GSMUA_Achr5P04150_001	Banana	nucleus	38.22	37.91
GSMUA_Achr4P01600_001	Banana	nucleus	39.49	37.24
CDY11947	Canola	nucleus	33.76	36.93
CDY36788	Canola	nucleus	35.67	35.9
TraesCS1D01G072900.1	Wheat	nucleus	25.8	34.91
Bra002828.1-P	Field mustard	nucleus	37.26	34.77
CDY49388	Canola	nucleus	37.1	34.72
CDX89336	Canola	nucleus	29.3	34.46
CDX94335	Canola	nucleus	28.18	34.44
Bra026438.1-P	Field mustard	nucleus	29.14	34.27
AT5G56270.1	Thale cress	nucleus	37.1	33.92
TraesCS2D01G332300.1	Wheat	nucleus	38.85	33.2
CDY69527	Canola	nucleus	28.34	32.78
CDY32799	Canola	nucleus	31.05	32.45
Bra019105.1-P	Field mustard	nucleus	27.07	32.14
CDY42736	Canola	nucleus	27.07	32.14
AT4G26440.1	Thale cress	nucleus	28.98	32.04
TraesCS5D01G116100.1	Wheat	nucleus	24.36	30.78
TraesCS3D01G341100.1	Wheat	nucleus	27.23	30.48
TraesCS5D01G406500.1	Wheat	nucleus	20.22	30.24
TraesCS4D01G151700.1	Wheat	nucleus	22.77	29.48
TraesCS1D01G292700.1	Wheat	nucleus, plastid	22.93	28.4
VIT_19s0015g01870.t01	Wine grape	nucleus	32.64	27.48
KRH62550	Soybean	nucleus	32.8	27.07
TraesCS2D01G190500.1	Wheat	nucleus	19.27	26.42
KRH56379	Soybean	nucleus	32.64	26.42
TraesCS2D01G198100.4	Wheat	nucleus	26.11	25.71
PGSC0003DMT400029328	Potato	nucleus	25.96	23.39
TraesCS7D01G287200.1	Wheat	nucleus	18.63	22.41
Solyc10g005680.1.1	Tomato	nucleus	24.52	21.91

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS7D01G239800	EnsemblPlants:TraesCS7D01G239800.2
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:204252970..204255510

Molecular Weight (calculated)

67827.9 Da

IEP (calculated)

7.736

GRAVY (calculated)

-0.717

Length

628 amino acids

Sequence
(BLAST)

001: MAGASNRRGA VMEDWMLSTP SPRTLMLSLF NDDFSSGPFS DVSSDSGSNK PHDGMERSKA SVGSSPGESS QVTKTSLHLE PNLFDANEKS SPDSGSPAER
101: NGFCALKIDT SRVGFSASIR SPIIIPPGVS PRELLESPVF LPNAIAQPSP TTGKLPFLMR TNAKTTIQSV HKKAQELSHD DHTISFQQIL RSKPTFSIVD
201: KDPSVTHQNQ PSASENNHRI PDNEQEDSKA NRNGEDCPAT VIVRAEDGYN WRKYGKKQVK NSDHPTSYYK CSHQNCPVKK KVERCQDGDI TEIVYKGSHN
301: HPLPPPDRRP GVPFSHSNDL QADGAENAPD DHFQHAHGEV PATNLSASLS REAFADRSAT REAIDVSPPT LSGEDNNREA HGTVSSGIDR DKDVTESKRR
401: MMDYVTPATA IGTIDIGALA SRAVREARVI VQTTSEVDVL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPS CPVRKHVERA SNDLKSVITT YEGKHTHEVP
501: ADRKNGCPSS GHGDVAPPPQ ADGLHWRSGP AQGGIIPQYS GAAAYGSLAQ LGVAGGFPFG VLPHGLALVP VPAQMAGHHP SAMQGNPRLV LQAREVKGNP
601: AARPADQSGT GPAAYQQLMS RLSQGPNM

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.