Factsheet for HORVU0Hr1G004890.10

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G057200.4
HORVU7Hr1G023760.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	HORVU7Hr1G023760.2	AT2G43790.1	24830428
AT4G26440.1	HORVU4Hr1G057200.4	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G351600.1	Wheat	nucleus	93.69	77.26
TraesCS2A01G330500.1	Wheat	nucleus	93.52	76.6
TraesCS2D01G332300.1	Wheat	nucleus	92.69	75.92
Zm00001d025669_P001	Maize	nucleus	61.13	55.51
Zm00001d003331_P001	Maize	nucleus	60.13	51.49
KXG26525	Sorghum	nucleus	62.29	50.68
GSMUA_Achr5P23900_001	Banana	nucleus	42.69	45.49
GSMUA_Achr6P03500_001	Banana	nucleus	35.55	41.55
GSMUA_Achr11P...	Banana	nucleus	44.02	40.96
Bra028939.1-P	Field mustard	nucleus	29.9	40.09
GSMUA_Achr5P04150_001	Banana	nucleus	40.03	38.07
CDX94335	Canola	nucleus	32.23	37.74
CDY11947	Canola	nucleus	35.88	37.63
Bra026438.1-P	Field mustard	nucleus	33.22	37.45
CDX89336	Canola	nucleus	33.22	37.45
GSMUA_Achr4P01600_001	Banana	nucleus	41.36	37.39
CDY36788	Canola	nucleus	38.37	37.02
HORVU7Hr1G049130.1	Barley	nucleus, plastid	14.62	35.92
CDY69527	Canola	nucleus	32.06	35.54
CDY42736	Canola	nucleus	31.23	35.54
Bra019105.1-P	Field mustard	nucleus	31.23	35.54
HORVU5Hr1G072020.1	Barley	nucleus	39.7	35.35
Bra002828.1-P	Field mustard	nucleus	39.37	35.22
CDY49388	Canola	nucleus	39.2	35.17
AT4G26440.1	Thale cress	nucleus	32.89	34.86
AT5G56270.1	Thale cress	nucleus	39.7	34.79
Os04t0471700-00	Rice	nucleus	56.15	33.87
CDY32799	Canola	nucleus	31.06	31.11
KRH62550	Soybean	nucleus	38.87	30.75
VIT_19s0015g01870.t01	Wine grape	nucleus	38.04	30.7
KRH56379	Soybean	nucleus	38.21	29.64
HORVU5Hr1G028340.1	Barley	nucleus	23.92	29.27
HORVU1Hr1G070250.2	Barley	nucleus, plastid	24.75	29.1
HORVU2Hr1G036320.1	Barley	nucleus	29.07	28.46
HORVU3Hr1G088200.4	Barley	nucleus, plastid	27.74	27.88
HORVU2Hr1G034420.2	Barley	nucleus	19.27	25.89
HORVU4Hr1G048400.1	Barley	mitochondrion	22.09	25.14
PGSC0003DMT400029328	Potato	nucleus	27.74	23.96
Solyc10g005680.1.1	Tomato	nucleus	26.91	23.04
HORVU7Hr1G066670.4	Barley	nucleus	20.1	20.86

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A287DVV9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU0Hr1G004890	EnsemblPlants:HORVU0Hr1G004890.10	InterPro:IPR003657	InterPro:IPR036576
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000B487417	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchrUn:+:28152810..28157297

Molecular Weight (calculated)

64574.1 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.812

Length

602 amino acids

Sequence
(BLAST)

001: MDGHTHIAME WKDQSARPDC SMLPSFLTDP FPADPLVEDC DGNNDGSEGA GFERHGLSVD VGSPQEEGKP MPATPHFGQR SSSSSSLSER MQARAGFSVA
101: KLSMPDSEYS GAQSPYLTIP PGLSPASLLE SPVFLSNAMV WIVLTTGKLL MLGDTNNNNN GRLEPPSIED RPGAFSFKPL DLKSSQYTAE GKKGSLHNSQ
201: HPSAPSRDVP VKTETNIQTT TRGANPLGYL NQAQFNNAQD PMKRSYHDCN NKRNRLAADS TAAGGDNNAS PPDNSLPAAD SEAAKVGDYP AAVATAAPAE
301: DGYSWRKYGQ KQVKHSEYPR SYYKCTHPSC QVKKKVERSH EGHVTEIIYK GTHNHPRPAA QGRRPAGGAQ VHPFNDAQMD APADNNNNGG YGNAGGSQPN
401: VEARSLWHGG VAVQDWRGDG LEATSSPSVP GELCDSSASM QVHDGAARFE SPEGGVDVTS AVSDEVDGDD RVAHGSMSQG QGAADTTEGD ELESKRRKLE
501: SCAIDMSTAS RAVREPRVVI QTTSEVDILE DGYRWRKYGQ KVVKGNPNPR SYYKCTHPGC SVRKHVERAS HDLKSVITTY EGKHNHEVPA ARNGGHGSSA
601: AA

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.