CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91470
CDY07729
CDY14459
CDY18383
CDY48650
CDY65564
CDY69941

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	CDX91470	AT2G38470.1	21395886
AT3G62770.1	CDY07729	AT2G38470.1	21395886
AT3G62770.1	CDY14459	AT2G38470.1	21395886
AT3G62770.1	CDY18383	AT2G38470.1	21395886
AT3G62770.1	CDY48650	AT2G38470.1	21395886
AT3G62770.1	CDY65564	AT2G38470.1	21395886
AT3G62770.1	CDY69941	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014393.1-P	Field mustard	cytosol	95.23	97.56
CDX89148	Canola	cytosol	96.42	97.35
CDX67903	Canola	nucleus	88.07	91.34
CDY25117	Canola	cytosol, plastid	91.65	89.51
AT3G62770.1	Thale cress	nucleus, plastid	90.21	88.94
CDX76661	Canola	plastid	89.74	88.68
CDY11447	Canola	nucleus	88.78	86.11
VIT_07s0104g01790.t01	Wine grape	plastid	69.45	68.63
VIT_07s0104g01780.t01	Wine grape	plastid	71.6	68.34
KRH68154	Soybean	cytosol, plastid	65.87	65.25
KRG96415	Soybean	cytosol, plastid	64.92	64.3
CDY27213	Canola	cytosol	52.03	56.33
CDX72135	Canola	cytosol	51.79	56.07
CDX72134	Canola	cytosol	51.79	56.07
CDY06959	Canola	cytosol, plastid	52.03	53.43
CDY14745	Canola	cytosol, plastid	52.03	53.43
KRH50149	Soybean	cytosol, mitochondrion	8.59	52.94
CDY52140	Canola	cytosol	41.29	45.89
CDX80950	Canola	cytosol	41.05	45.62
CDX72248	Canola	plastid	24.82	28.34
CDY39210	Canola	cytosol, plastid	24.58	28.07

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EnsemblPlants:CDX93962	ProteinID:CDX93962	ProteinID:CDX93962.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00156800001	InterPro:IPR001680	InterPro:IPR015943	PFAM:PF00400
PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF2023	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC04g21210D

Coordinates

chrLK031878:+:948726..950828

Molecular Weight (calculated)

46235.8 Da

IEP (calculated)

7.753

GRAVY (calculated)

-0.257

Length

419 amino acids

Sequence
(BLAST)

001: MATVSSASPW PSDSTSASDS NCTVPSHHRD RGDETESLDS FSSMSLNSEE ITHNSDRIPE SQTPANPPPS LLHLSFNQDH ACFAVGTDRG FRILNCDPFR
101: EIFRRDFDRG GGVAVVEMLF RCNILALVGG GPDPQYPPNK VMIWDDHQSR CIGELSFRSD VRSVRLRRDR IIVVLEQKIF VYNFADLKLM HQIETIANPK
201: GLCAVSQGAG SMVLVCPGLQ KGQVRIEHYA SKRTKFVMAH DSRIACFALT QDGHLLATAS SKGTLVRIFN TVDGTLRQEV RRGADRAEIY SLAFSSNAQW
301: LAVSSDKGTV HVFGLKGNSG AQVKDTPRIA SDLTRTSSSP SSSLSLFKGV LPKYFSSEWS VAQFRLVEGT QYVVAFGHQK NTVVILGMDG SFYRCQFDPV
401: NGGEMSQLEY HNCLKPPVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.