CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39210	Canola	cytosol, plastid	98.37	98.37
AT4G30510.1	Thale cress	cytosol	91.28	91.53
VIT_11s0037g00970.t01	Wine grape	cytosol	55.31	77.19
VIT_03s0091g00190.t01	Wine grape	plastid	17.98	70.21
KRH02984	Soybean	cytosol	67.85	67.48
KRH72365	Soybean	cytosol	67.57	67.39
Solyc07g006120.2.1	Tomato	cytosol	66.48	66.85
PGSC0003DMT400028996	Potato	cytosol	65.94	66.3
KRH07770	Soybean	plastid	35.15	61.72
GSMUA_Achr9P13430_001	Banana	plastid	60.22	60.05
KRH33489	Soybean	cytosol	23.71	59.59
Zm00001d018355_P005	Maize	cytosol, plastid	55.86	55.26
KXG31257	Sorghum	cytosol	55.31	54.72
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	53.41	52.55
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	53.13	52.28
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	53.13	52.28
Os02t0791800-01	Rice	cytosol	52.04	51.07
HORVU6Hr1G084430.3	Barley	cytosol	53.41	43.95
CDX67903	Canola	nucleus	28.61	25.99
CDX89148	Canola	cytosol	28.34	25.06
CDX93962	Canola	cytosol	28.34	24.82
CDX72135	Canola	cytosol	26.16	24.81
CDX72134	Canola	cytosol	26.16	24.81
CDY27213	Canola	cytosol	26.16	24.81
CDY25117	Canola	cytosol, plastid	28.61	24.48
CDX80950	Canola	cytosol	25.07	24.4
CDY52140	Canola	cytosol	24.8	24.14
CDX76661	Canola	plastid	27.52	23.82
CDY06959	Canola	cytosol, plastid	26.43	23.77
CDY14745	Canola	cytosol, plastid	26.16	23.53
CDY11447	Canola	nucleus	27.52	23.38

Protein Annotations

EnsemblPlants:CDX72248	EnsemblPlantsGene:GSBRNA2T00099716001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF17	ProteinID:CDX72248	ProteinID:CDX72248.1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEE055
MapMan:19.3.2.1.3	:	:	:	:	:

Description

BnaC07g42700D

Coordinates

chrLK031796:-:241902..244177

Molecular Weight (calculated)

39739.3 Da

IEP (calculated)

8.193

GRAVY (calculated)

0.071

Length

367 amino acids

Sequence
(BLAST)

001: MANQSSPSSS IYCASFNQDN SGFAISSKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLALVGAGEQ ASLSPRRLCL FNTTKGSPLK ELNFLTSILA
101: VRMNKKRLVV VLVEKTFVYD LNTLVMLDTI DTAPNPKAGL CAFSPSLEGC FLAVPASTTK GAVLVYNVMD LQSHSEIDAH RSPLAAIALS SNGMYIATAS
201: EQGTLIRVHL VSDSTKSYSF RRGTYPSTIY SLSFGPSTQL PDILIATSSS GSVHAFSLML AINQRSKRST SFLGSVLPDS VSDALDPAHH HVLQNAVSSG
301: IRSYAVVRKV DKLEGTSSPS QFTSIRATVS VITYSGYFQE YTLSINNKNE SLWTLEREFN LYPVISS

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.