CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98195
KRH17125
KRH30155
KRH72765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	KRG98195	AT2G38470.1	21395886
AT3G62770.1	KRH17125	AT2G38470.1	21395886
AT3G62770.1	KRH30155	AT2G38470.1	21395886
AT3G62770.1	KRH72765	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96415	Soybean	cytosol, plastid	94.09	94.09
KRG92887	Soybean	cytosol	61.47	68.97
Bra014393.1-P	Field mustard	cytosol	65.48	67.73
KRH33898	Soybean	nucleus	59.57	67.02
CDX89148	Canola	cytosol	65.72	66.99
VIT_07s0104g01780.t01	Wine grape	plastid	69.5	66.97
VIT_07s0104g01790.t01	Wine grape	plastid	66.43	66.27
AT3G62770.1	Thale cress	nucleus, plastid	66.43	66.12
CDX67903	Canola	nucleus	63.12	66.09
CDX93962	Canola	cytosol	65.25	65.87
CDX76661	Canola	plastid	65.72	65.57
Bra003509.1-P	Field mustard	nucleus	64.3	65.38
CDY25117	Canola	cytosol, plastid	65.72	64.8
KRH50149	Soybean	cytosol, mitochondrion	10.4	64.71
Bra007700.1-P	Field mustard	nucleus, plastid	64.78	63.72
CDY11447	Canola	nucleus	65.01	63.66
KRH64240	Soybean	cytosol, plastid	53.43	53.94
KRH53692	Soybean	plastid	53.43	53.81
KRH33489	Soybean	cytosol	10.4	30.14
KRH07770	Soybean	plastid	14.18	28.71
KRH02984	Soybean	cytosol	24.82	28.46
KRH72365	Soybean	cytosol	24.11	27.72

Protein Annotations

EntrezGene:100781692	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02002102	EnsemblPlantsGene:GLYMA_03G212100	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804
GO:GO:0080025	UniProt:I1JQJ8	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRH68154	ProteinID:KRH68154
ProteinID:KRH68154.1	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002339A95	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:41816966..41820153

Molecular Weight (calculated)

46585.1 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.298

Length

423 amino acids

Sequence
(BLAST)

001: MATLSACASP PWPNPDSPNS NPNPNFLPDQ SQTLDFDSLM PPQPESPPPN HHHSPDASPP ESSPSPPPPS ILYLSFNQDQ ACFAAAADNG FRIYNCDPFR
101: ELFRREFDGG GIGHVEMLFR CNILALVGGG PNPQYPPNKV MIWDDHQGRC IGELSFRAAV RGVRLRRDRI IVVVEQKIFV YNFADLKLVQ QIETVPNPKG
201: LCAVSQLSDS LVLACPGLHK GQIRVEHYAQ KKTKFISAHD SRIACFALTL DGQLIATAST KGTLIRIFDT DHGTLLQEVR RGANAAEIYS LAFSSTAQWL
301: AVSSDKGTVH VFSLKVNSSI PEQEKSQSSS NSDAAITPSS SSRSFIKLKG VLPKYFNSEW SVAQFHLQEG SHYTVAFGLQ KNTVIILGMD GSFYRCQFDP
401: VHGGEMTQLE YHNFLKPEPE TAL

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.