CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G179000.2	Wheat	plastid	50.49	44.25
TraesCS2D01G119500.1	Wheat	plastid	38.61	40.84
TraesCS2D01G116100.1	Wheat	cytosol	38.86	39.75
TraesCS2A01G115200.1	Wheat	cytosol	37.38	37.38
EES04163	Sorghum	cytosol	34.9	30.92
OQU86240	Sorghum	cytosol	31.68	30.48
KXG21420	Sorghum	peroxisome	28.96	29.32
CDY52140	Canola	cytosol	27.23	29.18
CDX80950	Canola	cytosol	26.98	28.91
AT5G05150.1	Thale cress	cytosol	26.73	28.88
Bra005844.1-P	Field mustard	cytosol	26.73	28.65
KXG31257	Sorghum	cytosol	18.56	20.22

Protein Annotations

EnsemblPlants:OQU90455	EnsemblPlantsGene:SORBI_3002G412001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF30	PFAM:PF00400	ProteinID:OQU90455	ProteinID:OQU90455.1	SEG:seg	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0009DC8B50	UniProt:A0A1W0W806	MapMan:19.3.2.1.3	:	:

Description

hypothetical protein

Coordinates

chr2:+:76018088..76019987

Molecular Weight (calculated)

43741.5 Da

IEP (calculated)

8.171

GRAVY (calculated)

-0.154

Length

404 amino acids

Sequence
(BLAST)

001: MASSVASRTW TRPAPTLSHP LVYLSFSHDA SCVIAADAST VHWLSCDTFS LRGLYQERGA SRAVVAACGD MLNEKASTCA VVTTMTRAAA LPAGGSETTT
101: FAVRRWRPGY LNYHWRYDEW ATDIDAGEVQ AVGVHGDKTF LVHDGRVDVY GPGGDRGVHV LLHRVETRPG GGTRTPLCAA SRVAPVAFAC AAAEAGEVSV
201: ERWAAAVDGF APLSSFRAHS SRLGCVAVSW DGRFVATASF KGTIVRVFHA ADGTLLRELR RGADRADICS MAFSHESKWL AVSSDKGTIH VFSVNVNVPS
301: PSPEQEDSNK PDSPNAGSAL NLNAKQGSSW SFFSGFVPGY FRQDGSLAKF RLREGVKYVV AFSHHEPNTI LVVGMDGSFY RCEFDPVKGG DMKQLEYRNF
401: MKMK

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.