Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005844.1-P | Field mustard | cytosol | 73.53 | 72.94 |
| CDX80950 | Canola | cytosol | 73.26 | 72.68 |
| CDY52140 | Canola | cytosol | 72.99 | 72.41 |
| AT2G40810.1 | Thale cress | cytosol | 49.47 | 47.07 |
| AT3G56440.1 | Thale cress | cytosol | 48.4 | 46.29 |
| AT3G62770.1 | Thale cress | nucleus, plastid | 44.12 | 38.82 |
| TraesCS2B01G134400.1 | Wheat | cytosol | 26.47 | 30.94 |
| TraesCS2D01G116100.1 | Wheat | cytosol | 31.55 | 29.87 |
| TraesCS2D01G119500.1 | Wheat | plastid | 30.48 | 29.84 |
| TraesCS2B01G134500.1 | Wheat | cytosol | 30.75 | 28.97 |
| TraesCS2A01G115200.1 | Wheat | cytosol | 31.28 | 28.96 |
| TraesCS2B01G134900.1 | Wheat | cytosol | 31.82 | 28.4 |
| OQU90455 | Sorghum | cytosol, mitochondrion | 28.88 | 26.73 |
| TraesCS4B01G179000.2 | Wheat | plastid | 30.48 | 24.73 |
| AT4G30510.1 | Thale cress | cytosol | 22.99 | 23.5 |
Protein Annotations
| MapMan:19.3.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:830397 | ProteinID:AED90834.1 | ArrayExpress:AT5G05150 | EnsemblPlantsGene:AT5G05150 |
| RefSeq:AT5G05150 | TAIR:AT5G05150 | RefSeq:AT5G05150-TAIR-G | EnsemblPlants:AT5G05150.1 | TAIR:AT5G05150.1 | Symbol:ATATG18E |
| ProteinID:BAB09691.1 | EMBL:DQ056670 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006497 | GO:GO:0006810 | GO:GO:0006914 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 | GO:GO:0034045 |
| GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | InterPro:IPR001680 | InterPro:IPR015943 | RefSeq:NP_196134.1 |
| PANTHER:PTHR11227 | PANTHER:PTHR11227:SF45 | UniProt:Q9FHK8 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00000A2CDD |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
ATG18EAutophagy-related protein 18e [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK8]
Coordinates
chr5:-:1524699..1526199
Molecular Weight (calculated)
41671.2 Da
IEP (calculated)
8.471
GRAVY (calculated)
0.044
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSIVSTVRG ILTLSRSETF DSPRDEAKSD LKVLSVAWNQ VCSGFIVGTN HGFNVYSCKP MIKKSISRAP HESGFKVAEM LFLSNLFAFV GNGYNNSEYP
101: PNKVFVWDDY RNCCLSELTF KSEVIAVKLA REHVVVVLKQ NIYVYTFNNL KVDRVIETLM NPKGLCCVTH VESKAVLACP GFHPGQVQVH DLRWNVIKFI
201: KAHDSAIACM TLTLDGSLLA TASTKGTLIR IFNAVDGTLL QEFRRGVERA EIYNVAISSN LKWVAASSEK GTLHVFRLRP DILSFDPASS SSFIRVILPK
301: YLYENERSFA QFSLPASTKF IVGFGSENTV LLVGIDGSFR RCKFDHADGG QMVELEHKYF FSLQETGNTM VGGV
101: PNKVFVWDDY RNCCLSELTF KSEVIAVKLA REHVVVVLKQ NIYVYTFNNL KVDRVIETLM NPKGLCCVTH VESKAVLACP GFHPGQVQVH DLRWNVIKFI
201: KAHDSAIACM TLTLDGSLLA TASTKGTLIR IFNAVDGTLL QEFRRGVERA EIYNVAISSN LKWVAASSEK GTLHVFRLRP DILSFDPASS SSFIRVILPK
301: YLYENERSFA QFSLPASTKF IVGFGSENTV LLVGIDGSFR RCKFDHADGG QMVELEHKYF FSLQETGNTM VGGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.