Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04750.1 | CDY02165 | AT5G61210.1 | 23661365 |
| AT1G04750.1 | CDY23079 | AT5G61210.1 | 23661365 |
| AT1G04750.1 | CDY42860 | AT5G61210.1 | 23661365 |
| AT1G04750.1 | CDY47025 | AT5G61210.1 | 23661365 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15521 | Canola | endoplasmic reticulum | 98.63 | 98.63 |
| AT1G04750.1 | Thale cress | endoplasmic reticulum, golgi | 98.17 | 98.17 |
| CDX89793 | Canola | endoplasmic reticulum | 98.17 | 97.73 |
| CDY18254 | Canola | endoplasmic reticulum | 98.17 | 97.73 |
| CDY10053 | Canola | endoplasmic reticulum | 96.8 | 96.36 |
| CDY06150 | Canola | cytosol | 96.35 | 95.91 |
| CDX84702 | Canola | endoplasmic reticulum | 95.43 | 94.14 |
| CDY17139 | Canola | cytosol, extracellular | 95.43 | 93.72 |
| CDY19450 | Canola | cytosol, extracellular | 94.98 | 93.27 |
| CDX79510 | Canola | endoplasmic reticulum | 94.52 | 93.24 |
| GSMUA_Achr9P25440_001 | Banana | cytosol, vacuole | 89.95 | 89.95 |
| VIT_05s0136g00290.t01 | Wine grape | extracellular | 89.5 | 89.09 |
| GSMUA_Achr8P15290_001 | Banana | cytosol, endoplasmic reticulum | 89.04 | 89.04 |
| CDY12188 | Canola | cytosol | 89.04 | 88.64 |
| GSMUA_Achr7P01760_001 | Banana | plasma membrane | 88.58 | 88.58 |
| Os07t0194000-01 | Rice | plasma membrane | 88.58 | 88.18 |
| CDX84731 | Canola | cytosol | 88.58 | 88.18 |
| GSMUA_Achr4P22260_001 | Banana | cytosol, extracellular | 87.67 | 87.67 |
| GSMUA_Achr9P11030_001 | Banana | cytosol | 87.67 | 87.67 |
| Os03t0803000-01 | Rice | plasma membrane | 87.21 | 86.82 |
| CDY19154 | Canola | cytosol | 87.21 | 86.82 |
| EER96027 | Sorghum | extracellular | 87.67 | 86.49 |
| Zm00001d007767_P001 | Maize | extracellular | 87.67 | 86.49 |
| OQU90815 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 86.76 | 86.36 |
| GSMUA_Achr2P17740_001 | Banana | cytosol | 85.39 | 85.39 |
| CDY48531 | Canola | cytosol | 84.93 | 84.55 |
| CDY37751 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 84.02 | 84.02 |
| TraesCS5B01G457700.1 | Wheat | vacuole | 84.02 | 82.88 |
| TraesCS5D01G459900.1 | Wheat | vacuole | 84.02 | 82.88 |
| TraesCS5A01G449900.1 | Wheat | unclear | 84.02 | 82.51 |
| HORVU5Hr1G107510.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 84.02 | 82.51 |
| CDY59643 | Canola | extracellular | 27.4 | 81.08 |
| CDX79466 | Canola | endoplasmic reticulum | 63.93 | 79.55 |
| CDY19156 | Canola | cytosol | 51.6 | 78.47 |
| CDY59642 | Canola | endoplasmic reticulum | 63.47 | 78.09 |
| CDY23768 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 58.45 | 76.65 |
| CDY48527 | Canola | cytosol | 24.2 | 73.61 |
| Zm00001d019091_P002 | Maize | vacuole | 86.76 | 72.8 |
| Zm00001d013055_P002 | Maize | extracellular, plasma membrane | 78.08 | 72.46 |
| CDX79465 | Canola | extracellular | 27.85 | 70.93 |
| CDY22900 | Canola | cytosol, plasma membrane, plastid | 70.32 | 69.37 |
| CDY44179 | Canola | cytosol | 69.86 | 68.92 |
| GSMUA_Achr8P03260_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 68.95 | 68.64 |
| CDY23767 | Canola | extracellular | 31.96 | 65.42 |
| CDX67594 | Canola | cytosol | 61.64 | 56.02 |
| CDY07551 | Canola | cytosol | 61.19 | 55.83 |
| CDX76153 | Canola | cytosol | 61.64 | 55.79 |
| CDX78228 | Canola | cytosol, plasma membrane | 60.27 | 55.0 |
| CDX73490 | Canola | plasma membrane | 59.82 | 54.36 |
| CDY22757 | Canola | cytosol | 49.77 | 53.96 |
| CDY13199 | Canola | plasma membrane | 47.03 | 51.76 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 40.64 | 40.64 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 40.18 | 40.0 |
| CDX70999 | Canola | endoplasmic reticulum | 40.18 | 39.82 |
| CDX69781 | Canola | plasma membrane | 40.18 | 39.82 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 39.27 | 39.09 |
| CDX88799 | Canola | plasma membrane | 39.27 | 38.91 |
| CDX97084 | Canola | plasma membrane | 39.27 | 38.91 |
| CDY09133 | Canola | endoplasmic reticulum | 38.36 | 38.01 |
| TraesCS3B01G193500.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 70.32 | 34.38 |
| PGSC0003DMT400043452 | Potato | cytosol | 52.97 | 31.44 |
| Solyc12g098170.1.1 | Tomato | cytosol | 16.44 | 11.8 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.4 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:A0A078DH08 | EnsemblPlants:CDX86608 |
| ProteinID:CDX86608 | ProteinID:CDX86608.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00145258001 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
| InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 |
| PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF92 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 |
| InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI0004EAD73F | SEG:seg | : | : |
Description
BnaC08g00950D
Coordinates
chrLK031846:+:1060758..1062118
Molecular Weight (calculated)
24736.3 Da
IEP (calculated)
8.996
GRAVY (calculated)
-0.106
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV ESAGRQIPMA FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIVALILIIV LSVCHGFKC
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIVALILIIV LSVCHGFKC
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
Arabidopsis Description
VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.