CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0803000-01	Rice	plasma membrane	95.91	95.91
EER96027	Sorghum	extracellular	96.36	95.5
TraesCS5B01G457700.1	Wheat	vacuole	91.82	90.99
TraesCS5D01G459900.1	Wheat	vacuole	91.82	90.99
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	90.45	90.87
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	90.45	90.87
TraesCS5A01G449900.1	Wheat	unclear	91.82	90.58
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.82	90.58
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	90.0	90.41
GSMUA_Achr9P11030_001	Banana	cytosol	90.0	90.41
VIT_05s0136g00290.t01	Wine grape	extracellular	89.55	89.55
GSMUA_Achr7P01760_001	Banana	plasma membrane	89.09	89.5
Bra015345.1-P	Field mustard	endoplasmic reticulum	86.82	86.82
CDY18254	Canola	endoplasmic reticulum	86.82	86.82
CDX89793	Canola	endoplasmic reticulum	86.82	86.82
CDX86608	Canola	endoplasmic reticulum	86.36	86.76
CDX84731	Canola	cytosol	86.36	86.36
Bra022893.1-P	Field mustard	cytosol	86.36	86.36
CDY15521	Canola	endoplasmic reticulum	85.91	86.3
CDY12188	Canola	cytosol	85.91	85.91
Bra005568.1-P	Field mustard	cytosol	85.91	85.91
Zm00001d013055_P002	Maize	extracellular, plasma membrane	91.36	85.17
Bra032493.1-P	Field mustard	cytosol	85.0	85.0
CDY06150	Canola	cytosol	84.55	84.55
Bra030588.1-P	Field mustard	endoplasmic reticulum	84.09	84.47
CDY10053	Canola	endoplasmic reticulum	84.09	84.09
CDY19154	Canola	cytosol	84.09	84.09
Bra005523.1-P	Field mustard	cytosol, extracellular	85.0	83.86
CDY17139	Canola	cytosol, extracellular	85.0	83.86
Bra021804.1-P	Field mustard	cytosol	83.64	83.64
CDY19450	Canola	cytosol, extracellular	84.55	83.41
Bra022926.1-P	Field mustard	endoplasmic reticulum	84.09	83.33
CDX79510	Canola	endoplasmic reticulum	84.09	83.33
CDX84702	Canola	endoplasmic reticulum	84.09	83.33
CDY48531	Canola	cytosol	82.27	82.27
CDX79466	Canola	endoplasmic reticulum	63.18	78.98
CDY19156	Canola	cytosol	50.91	77.78
CDY59643	Canola	extracellular	25.91	77.03
CDY59642	Canola	endoplasmic reticulum	61.82	76.4
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	75.0	75.34
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	74.55	74.89
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	70.91	70.91
KXG40114	Sorghum	cytosol, vacuole	70.45	70.45
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.73	69.46
CDX79465	Canola	extracellular	26.36	67.44
KXG24150	Sorghum	cytosol	66.82	64.19
CDY23767	Canola	extracellular	28.18	57.94
KXG25383	Sorghum	plastid	60.91	55.6
KXG34786	Sorghum	cytosol	60.45	53.41
AT3G24890.2	Thale cress	cytosol	27.73	49.19
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	18.18	48.19
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.27	37.95
OQU75937	Sorghum	plasma membrane	37.73	37.56
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	36.82	36.49
EES05972	Sorghum	cytosol	36.36	35.09
PGSC0003DMT400043452	Potato	cytosol	52.27	31.17
Solyc12g098170.1.1	Tomato	cytosol	16.82	12.13

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:A0A1Z5S4Y8	ncoils:Coil
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	EnsemblPlants:OQU90815	ProteinID:OQU90815
ProteinID:OQU90815.1	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	EnsemblPlantsGene:SORBI_3001G051200	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00017B7C80	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:3777098..3780262

Molecular Weight (calculated)

24783.3 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.068

Length

220 amino acids

Sequence
(BLAST)

001: MGQQSLIYAF VARGTVILAE YTEFTGNFTT IASQCLMKLP ASNNKFTYNC DGHTFNYLVE DGFTYCVVAV ESVGQQIPIA FMDRVKEDFT KRYGGGKAAT
101: AAANSLNREF GSKLKEHMQY CVDHPEEVSK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TNVRRKMWLQ NMKIKLIVLG
201: IIIALILIII LSVCHGFKCH

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.