Factsheet for TraesCS5A01G449900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	100.0	100.0
TraesCS5B01G457700.1	Wheat	vacuole	99.1	99.55
TraesCS5D01G459900.1	Wheat	vacuole	99.1	99.55
Os03t0803000-01	Rice	plasma membrane	91.48	92.73
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.58	91.82
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	86.1	87.67
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	85.2	86.76
VIT_05s0136g00290.t01	Wine grape	extracellular	85.2	86.36
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	84.75	86.3
GSMUA_Achr9P11030_001	Banana	cytosol	84.3	85.84
GSMUA_Achr7P01760_001	Banana	plasma membrane	83.86	85.39
CDY15521	Canola	endoplasmic reticulum	82.96	84.47
Bra022893.1-P	Field mustard	cytosol	82.96	84.09
CDX84731	Canola	cytosol	82.96	84.09
CDX86608	Canola	endoplasmic reticulum	82.51	84.02
Bra005568.1-P	Field mustard	cytosol	82.51	83.64
CDY12188	Canola	cytosol	82.51	83.64
CDX89793	Canola	endoplasmic reticulum	82.06	83.18
Bra015345.1-P	Field mustard	endoplasmic reticulum	82.06	83.18
CDY18254	Canola	endoplasmic reticulum	82.06	83.18
Bra032493.1-P	Field mustard	cytosol	81.61	82.73
Bra030588.1-P	Field mustard	endoplasmic reticulum	81.17	82.65
CDY19450	Canola	cytosol, extracellular	82.51	82.51
CDY06150	Canola	cytosol	81.17	82.27
CDY17139	Canola	cytosol, extracellular	82.06	82.06
Bra005523.1-P	Field mustard	cytosol, extracellular	82.06	82.06
CDY19154	Canola	cytosol	80.72	81.82
CDY10053	Canola	endoplasmic reticulum	80.72	81.82
Bra021804.1-P	Field mustard	cytosol	80.72	81.82
CDX84702	Canola	endoplasmic reticulum	81.17	81.53
CDX79510	Canola	endoplasmic reticulum	81.17	81.53
Bra022926.1-P	Field mustard	endoplasmic reticulum	81.17	81.53
CDY48531	Canola	cytosol	79.37	80.45
Zm00001d013055_P002	Maize	extracellular, plasma membrane	82.96	78.39
CDX79466	Canola	endoplasmic reticulum	60.99	77.27
CDY19156	Canola	cytosol	49.78	77.08
CDY59643	Canola	extracellular	25.11	75.68
CDY59642	Canola	endoplasmic reticulum	59.19	74.16
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	72.2	73.52
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	72.2	73.52
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	68.16	69.09
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.12	68.26
CDX79465	Canola	extracellular	25.56	66.28
TraesCS4A01G021800.2	Wheat	cytosol	69.51	61.02
TraesCS5A01G003100.1	Wheat	cytosol	62.78	60.34
CDY23767	Canola	extracellular	27.35	57.01
TraesCS7A01G279100.1	Wheat	cytosol, plastid	58.74	54.13
AT3G24890.2	Thale cress	cytosol	26.46	47.58
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.17	40.4
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	35.87	36.2
TraesCS7A01G328000.1	Wheat	plasma membrane	35.87	36.04
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	34.08	32.62
PGSC0003DMT400043452	Potato	cytosol	50.22	30.35
Solyc12g098170.1.1	Tomato	cytosol	16.14	11.8

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	ncoils:Coil	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G449900	EnsemblPlants:TraesCS5A01G449900.1
TIGR:cd15843	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:631664313..631668342

Molecular Weight (calculated)

25053.6 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.069

Length

223 amino acids

Sequence
(BLAST)

001: MGQQSLIYAF VARGTVVLAE YTEFTGNFTT IASQCLVKLP ASNNKFTYNC DGHTFNYLVE DGFTYCVVAV ESVGQQMPIA FLVRVKDDFS KRYAGGKAAT
101: AAPSSLNREF GSKLKEHMQY CVDHPEEINK LAKVQAQVSE VKNVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TQVRRKMWLQ NMKIKLIVLG
201: IIVALILIII LSVCHGFNCG KSK

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.