Factsheet for Bra022893.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84731	Canola	cytosol	100.0	100.0
Bra005568.1-P	Field mustard	cytosol	96.36	96.36
Bra021804.1-P	Field mustard	cytosol	95.45	95.45
AT1G04760.2	Thale cress	cytosol	92.27	92.27
CDX79466	Canola	endoplasmic reticulum	72.73	90.91
VIT_05s0136g00290.t01	Wine grape	extracellular	88.64	88.64
Os07t0194000-01	Rice	plasma membrane	88.64	88.64
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	88.18	88.58
CDY19156	Canola	cytosol	57.73	88.19
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	87.73	88.13
Bra015345.1-P	Field mustard	endoplasmic reticulum	87.73	87.73
GSMUA_Achr7P01760_001	Banana	plasma membrane	87.27	87.67
Bra022926.1-P	Field mustard	endoplasmic reticulum	87.73	86.94
Zm00001d007767_P001	Maize	extracellular	87.73	86.94
EER96027	Sorghum	extracellular	87.73	86.94
GSMUA_Achr9P11030_001	Banana	cytosol	86.36	86.76
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	86.36	86.76
Bra005523.1-P	Field mustard	cytosol, extracellular	87.73	86.55
Bra032493.1-P	Field mustard	cytosol	86.36	86.36
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.36	86.36
Os03t0803000-01	Rice	plasma membrane	85.91	85.91
Bra030588.1-P	Field mustard	endoplasmic reticulum	85.0	85.39
GSMUA_Achr2P17740_001	Banana	cytosol	84.55	84.93
CDY59642	Canola	endoplasmic reticulum	68.64	84.83
TraesCS5B01G457700.1	Wheat	vacuole	84.09	83.33
TraesCS5D01G459900.1	Wheat	vacuole	84.09	83.33
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.09	82.96
TraesCS5A01G449900.1	Wheat	unclear	84.09	82.96
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	80.0	80.37
AT2G32670.1	Thale cress	endoplasmic reticulum, golgi	94.55	72.98
Zm00001d013055_P002	Maize	extracellular, plasma membrane	78.18	72.88
Zm00001d019091_P002	Maize	vacuole	86.36	72.8
Bra033511.1-P	Field mustard	cytosol	70.45	69.82
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	68.18	68.18
Bra003177.1-P	Field mustard	cytosol	61.36	56.02
Bra014823.1-P	Field mustard	golgi	60.91	55.37
Bra007063.1-P	Field mustard	cytosol, plasma membrane	60.0	55.0
Bra038066.1-P	Field mustard	cytosol	49.09	53.47
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	37.73	37.9
Bra008987.1-P	Field mustard	mitochondrion	37.27	37.1
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	36.82	36.65
Bra020187.1-P	Field mustard	endoplasmic reticulum	36.36	36.2
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.27	35.49
PGSC0003DMT400043452	Potato	cytosol	50.91	30.35
Bra011325.1-P	Field mustard	endoplasmic reticulum	34.55	20.82
Solyc12g098170.1.1	Tomato	cytosol	17.27	12.46

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra022893	EnsemblPlants:Bra022893.1
EnsemblPlants:Bra022893.1-P	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4E293
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI000254039E	SEG:seg	:	:	:

Description

AT2G32670 (E=1e-107) ATVAMP725, VAMP725 | ATVAMP725

Coordinates

chrA03:+:7618767..7620241

Molecular Weight (calculated)

24945.5 Da

IEP (calculated)

9.365

GRAVY (calculated)

-0.169

Length

220 amino acids

Sequence
(BLAST)

001: MGQQNLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVV NGFTYCVVAV ESVGRQIPMA FLERVKEDFN KRYGGGKATT
101: AKPNSLNKEF GSKLKEHMQY CVDHPEEINK LAKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTEDLR SQAQDFRTQG TKIRRKMWFE NMKIKLIVAG
201: IIIALILIII LSVCHGFKCT

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.