Factsheet for GSMUA_Achr2P17740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	90.41	90.41
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	89.04	89.04
VIT_05s0136g00290.t01	Wine grape	extracellular	88.58	88.18
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	88.13	88.13
GSMUA_Achr9P11030_001	Banana	cytosol	88.13	88.13
GSMUA_Achr7P01760_001	Banana	plasma membrane	87.67	87.67
CDY18254	Canola	endoplasmic reticulum	85.84	85.45
CDX89793	Canola	endoplasmic reticulum	85.84	85.45
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	85.84	85.45
Bra015345.1-P	Field mustard	endoplasmic reticulum	85.84	85.45
CDX86608	Canola	endoplasmic reticulum	85.39	85.39
CDY15521	Canola	endoplasmic reticulum	84.93	84.93
Bra022893.1-P	Field mustard	cytosol	84.93	84.55
CDX84731	Canola	cytosol	84.93	84.55
Bra032493.1-P	Field mustard	cytosol	84.47	84.09
Bra005568.1-P	Field mustard	cytosol	84.47	84.09
CDY12188	Canola	cytosol	84.47	84.09
CDY06150	Canola	cytosol	84.02	83.64
Bra030588.1-P	Field mustard	endoplasmic reticulum	83.56	83.56
CDY10053	Canola	endoplasmic reticulum	83.56	83.18
CDY19154	Canola	cytosol	83.11	82.73
Bra005523.1-P	Field mustard	cytosol, extracellular	84.02	82.51
CDY17139	Canola	cytosol, extracellular	84.02	82.51
CDX84702	Canola	endoplasmic reticulum	83.56	82.43
Bra022926.1-P	Field mustard	endoplasmic reticulum	83.56	82.43
CDX79510	Canola	endoplasmic reticulum	83.56	82.43
Bra021804.1-P	Field mustard	cytosol	82.65	82.27
CDY19450	Canola	cytosol, extracellular	83.56	82.06
CDY48531	Canola	cytosol	81.28	80.91
CDY19156	Canola	cytosol	52.05	79.17
CDX79466	Canola	endoplasmic reticulum	63.01	78.41
CDY59642	Canola	endoplasmic reticulum	61.64	75.84
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.52	73.52
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	73.52	73.52
CDY59643	Canola	extracellular	24.66	72.97
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	70.78	70.45
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.51	68.86
CDX79465	Canola	extracellular	25.57	65.12
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.3	60.08
GSMUA_Achr9P30970_001	Banana	cytosol	60.27	57.89
CDY23767	Canola	extracellular	27.4	56.07
AT3G24890.2	Thale cress	cytosol	28.31	50.0
GSMUA_Achr6P35140_001	Banana	plasma membrane	37.44	37.27
GSMUA_Achr11P...	Banana	endoplasmic reticulum	36.99	37.16
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	36.99	36.82
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	36.07	36.24
PGSC0003DMT400043452	Potato	cytosol	52.51	31.17
Solyc12g098170.1.1	Tomato	cytosol	16.89	12.13

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr2G17740_001	EnsemblPlants:GSMUA_Achr2P17740_001
EnsemblPlants:GSMUA_Achr2T17740_001	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M0S8W5
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI000296EF32	SEG:seg	:	:	:

Description

Putative vesicle-associated membrane protein 726 [Source:GMGC_GENE;Acc:GSMUA_Achr2G17740_001]

Coordinates

chr2:+:18165702..18169134

Molecular Weight (calculated)

24729.1 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.138

Length

219 amino acids

Sequence
(BLAST)

001: MEQRSLIYSF VARGTAILAE YTEFTGNFTT IASQCLQKLP ATNNKFTYNC DGHTFNYLVD DGFTYGVVAA ESFGRQVPIA FLERVKEDFS KRYGGGKAAT
101: AAANSLTREF GSKLKEHMQY CVDHPEEISK LAKVQAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLH SQAQDFRQQG TKMRRKMWLQ NMKIKLIVLG
201: IIIALILIII LSVCHGFKC

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.