Factsheet for Bra030588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012978.1-P
Bra029328.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04750.1	Bra012978.1-P	AT5G61210.1	23661365
AT1G04750.1	Bra029328.1-P	AT5G61210.1	23661365

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15521	Canola	endoplasmic reticulum	98.17	98.17
AT1G04750.1	Thale cress	endoplasmic reticulum, golgi	95.89	95.89
Bra015345.1-P	Field mustard	endoplasmic reticulum	94.98	94.55
Bra032493.1-P	Field mustard	cytosol	94.52	94.09
Bra022926.1-P	Field mustard	endoplasmic reticulum	93.15	91.89
Bra005523.1-P	Field mustard	cytosol, extracellular	93.15	91.48
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	87.21	87.21
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	86.3	86.3
VIT_05s0136g00290.t01	Wine grape	extracellular	86.3	85.91
Os07t0194000-01	Rice	plasma membrane	86.3	85.91
Bra005568.1-P	Field mustard	cytosol	85.84	85.45
GSMUA_Achr7P01760_001	Banana	plasma membrane	85.39	85.39
Bra022893.1-P	Field mustard	cytosol	85.39	85.0
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	84.93	84.93
GSMUA_Achr9P11030_001	Banana	cytosol	84.93	84.93
Os03t0803000-01	Rice	plasma membrane	84.93	84.55
EER96027	Sorghum	extracellular	85.39	84.23
Zm00001d007767_P001	Maize	extracellular	85.39	84.23
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.47	84.09
GSMUA_Achr2P17740_001	Banana	cytosol	83.56	83.56
Bra021804.1-P	Field mustard	cytosol	83.11	82.73
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	82.19	82.19
TraesCS5B01G457700.1	Wheat	vacuole	82.65	81.53
TraesCS5D01G459900.1	Wheat	vacuole	82.65	81.53
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.65	81.17
TraesCS5A01G449900.1	Wheat	unclear	82.65	81.17
Zm00001d019091_P002	Maize	vacuole	84.47	70.88
Zm00001d013055_P002	Maize	extracellular, plasma membrane	75.8	70.34
Bra033511.1-P	Field mustard	cytosol	68.95	68.02
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	67.12	66.82
Bra003177.1-P	Field mustard	cytosol	60.73	55.19
Bra014823.1-P	Field mustard	golgi	60.73	54.96
Bra007063.1-P	Field mustard	cytosol, plasma membrane	59.82	54.58
Bra038066.1-P	Field mustard	cytosol	49.77	53.96
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.18	40.18
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	39.27	38.91
Bra020187.1-P	Field mustard	endoplasmic reticulum	38.36	38.01
Bra008987.1-P	Field mustard	mitochondrion	38.36	38.01
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.95	33.71
PGSC0003DMT400043452	Potato	cytosol	52.05	30.89
Bra011325.1-P	Field mustard	endoplasmic reticulum	36.53	21.92
Solyc12g098170.1.1	Tomato	cytosol	15.98	11.48

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra030588	EnsemblPlants:Bra030588.1
EnsemblPlants:Bra030588.1-P	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4EP68
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI00025456E4	SEG:seg	:	:	:

Description

AT1G04750 (E=8e-108) VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)

Coordinates

chrA08:+:21195737..21197041

Molecular Weight (calculated)

24642.2 Da

IEP (calculated)

8.996

GRAVY (calculated)

-0.105

Length

219 amino acids

Sequence
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGTSPT VAAQCLQKLP SPNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT
101: AQASSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIVALILIIV LSVCHGFKC

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.