Factsheet for Bra012978.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019760.1-P
Bra026974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61210.1	Bra019760.1-P	AT1G12360.1	11591731
AT5G61210.1	Bra026974.1-P	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02165	Canola	nucleus	97.38	97.06
AT5G61210.1	Thale cress	nucleus	86.23	87.67
Bra029328.1-P	Field mustard	nucleus, plastid	82.95	86.05
Bra005958.1-P	Field mustard	cytosol	69.51	72.6
KRH56857	Soybean	nucleus	62.62	63.67
VIT_17s0000g06860.t01	Wine grape	nucleus	63.61	63.61
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	63.61	63.4
Solyc06g069570.2.1	Tomato	nucleus, plastid	63.28	63.07
Bra026875.1-P	Field mustard	cytosol	33.77	62.8
PGSC0003DMT400083166	Potato	nucleus	62.95	62.75
KRH03094	Soybean	cytosol	61.31	62.33
KRH63266	Soybean	nucleus	57.7	60.48
KRH54642	Soybean	nucleus	57.7	60.27
GSMUA_Achr4P23350_001	Banana	nucleus	48.85	60.08
Solyc03g115470.2.1	Tomato	nucleus	64.26	57.14
GSMUA_Achr5P01680_001	Banana	cytosol	50.49	55.8
TraesCS7A01G049300.1	Wheat	nucleus, plastid	49.18	51.55
Zm00001d019505_P001	Maize	nucleus	47.54	51.06
Bra013246.1-P	Field mustard	cytosol	50.16	50.33
TraesCS7D01G044400.1	Wheat	nucleus, plastid	50.16	50.16
KXG34983	Sorghum	nucleus, plastid	47.54	50.0
TraesCS4A01G435200.1	Wheat	cytosol, plastid	50.49	49.2
Bra032989.1-P	Field mustard	nucleus	57.7	45.95
Os02t0437200-01	Rice	plasma membrane	21.64	44.3
HORVU7Hr1G008760.1	Barley	nucleus, plastid	34.75	44.17
Bra009311.1-P	Field mustard	plastid	67.54	20.24

Protein Annotations

EnsemblPlants:Bra012978.1	EnsemblPlants:Bra012978.1-P	EnsemblPlantsGene:Bra012978	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	SEG:seg	SMART:SM00397
SUPFAM:SSF58038	UniParc:UPI000254050E	UniProt:M4D918	MapMan:22.7.3.1	:	:

Description

AT5G61210 (E=2e-138) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding

Coordinates

chrA03:+:21233935..21235196

Molecular Weight (calculated)

34206.8 Da

IEP (calculated)

7.394

GRAVY (calculated)

-1.089

Length

305 amino acids

Sequence
(BLAST)

001: MFGLRKSPAK LPKHNSADPG FHKSSKPNPF DSDDELDNNS NKHALNPSKR TSSEPSLADM SPNPFDGEEK VFTSSSKQSL TSNSRYQYKN NFRDSGGVEN
101: QSVQELEGYA VYKAEETTKS VQGCLKVAED IRSDATRTLV MLHEQGEQIT RTHHQAVEID HDLSRGEKLL GSLGGMFSKT WKPKKTRPIN GPVITRDHSP
201: TRRINHLEKR EKLGLNPAPN GQSRSREPLP ESADAYQRVE MEKAKQDDGL SDLSDLLGEL KNMAVDMGSE IEKQNKGLDH LQDDVDELNF RVQQSNQRGR
301: RLLGK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.