Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P23350_001 | Banana | nucleus | 64.86 | 72.18 |
| GSMUA_Achr6P24620_001 | Banana | nucleus | 55.43 | 57.52 |
| Bra026875.1-P | Field mustard | cytosol | 34.06 | 57.32 |
| Zm00001d019505_P001 | Maize | nucleus | 55.8 | 54.23 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 54.35 | 53.57 |
| CDY47025 | Canola | nucleus, plastid | 53.62 | 53.24 |
| KRH63266 | Soybean | nucleus | 55.8 | 52.92 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 56.16 | 52.72 |
| CDY42860 | Canola | cytosol, plastid | 53.26 | 52.69 |
| KRH56857 | Soybean | nucleus | 57.25 | 52.67 |
| AT5G61210.1 | Thale cress | nucleus | 56.88 | 52.33 |
| AT1G13890.2 | Thale cress | nucleus | 49.64 | 52.09 |
| KRH54642 | Soybean | nucleus | 55.07 | 52.05 |
| Bra005958.1-P | Field mustard | cytosol | 55.07 | 52.05 |
| CDX78314 | Canola | cytosol | 55.07 | 51.88 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 57.25 | 51.8 |
| KXG34983 | Sorghum | nucleus, plastid | 54.35 | 51.72 |
| KRH03094 | Soybean | cytosol | 56.16 | 51.67 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 56.16 | 50.65 |
| CDY02165 | Canola | nucleus | 56.16 | 50.65 |
| Bra012978.1-P | Field mustard | nucleus | 55.8 | 50.49 |
| CDY23079 | Canola | nucleus | 55.07 | 50.0 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 52.54 | 49.83 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 54.71 | 49.35 |
| KRH70869 | Soybean | cytosol | 50.0 | 49.29 |
| PGSC0003DMT400083166 | Potato | nucleus | 54.35 | 49.02 |
| AT5G07880.1 | Thale cress | nucleus | 44.57 | 49.0 |
| KRH75005 | Soybean | cytosol | 48.91 | 48.21 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 52.9 | 47.87 |
| CDX73442 | Canola | nucleus | 35.87 | 47.83 |
| CDY16118 | Canola | cytosol | 46.01 | 47.74 |
| CDY33792 | Canola | cytosol | 46.01 | 47.74 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 52.9 | 46.65 |
| Solyc03g115470.2.1 | Tomato | nucleus | 57.25 | 46.06 |
| Solyc05g012520.2.1 | Tomato | nucleus | 41.3 | 45.97 |
| Os02t0437200-01 | Rice | plasma membrane | 23.91 | 44.3 |
| PGSC0003DMT400072798 | Potato | cytosol | 42.39 | 44.15 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 36.59 | 42.08 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 51.45 | 41.52 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 51.45 | 40.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.22 | 40.38 |
| CDX81075 | Canola | nucleus | 13.77 | 38.0 |
| Bra013246.1-P | Field mustard | cytosol | 40.94 | 37.17 |
| Bra032989.1-P | Field mustard | nucleus | 42.39 | 30.55 |
| Bra009311.1-P | Field mustard | plastid | 51.45 | 13.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P01680_001 | EnsemblPlants:GSMUA_Achr5T01680_001 | EnsemblPlantsGene:GSMUA_Achr5G01680_001 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom |
| ncoils:Coil | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF58038 | UniParc:UPI00029607DA | UniProt:M0SUU7 | MapMan:22.7.3.1 | : | : |
Description
SNARE domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G01680_001]
Coordinates
chr5:-:987461..989811
Molecular Weight (calculated)
30552.8 Da
IEP (calculated)
8.972
GRAVY (calculated)
-0.893
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTWKTPLSG NQQQHAKPGF SGSNPFDSVP DSDRFGDSKD KGSGTTSSQV LHSGFSTAKA KYKNDFRDSG GIENQSVQEL QNYSAYKAEE TTIKLNGCLK
101: IAEEIREGAS NTLVTLHQQG EQITRTHQAV ADIEPDLSRG EKLLGSLGGL FSKKWKPKKT HKIKGPLSIK DDSSERSRHL EQRQRLGLAA PLPRSEPQHF
201: SEPASALQKV EIEKAKQDDV LSDLSNLLGE LKNMAIDMGS EFEKQNVALD RAQDDVDEMN TRVHGANLRG RRLLRK
101: IAEEIREGAS NTLVTLHQQG EQITRTHQAV ADIEPDLSRG EKLLGSLGGL FSKKWKPKKT HKIKGPLSIK DDSSERSRHL EQRQRLGLAA PLPRSEPQHF
201: SEPASALQKV EIEKAKQDDV LSDLSNLLGE LKNMAIDMGS EFEKQNVALD RAQDDVDEMN TRVHGANLRG RRLLRK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.