CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75005	Soybean	cytosol	93.21	93.21
Bra026875.1-P	Field mustard	cytosol	41.79	71.34
AT1G13890.2	Thale cress	nucleus	63.93	68.06
CDY16118	Canola	cytosol	63.21	66.54
CDY33792	Canola	cytosol	63.21	66.54
PGSC0003DMT400072798	Potato	cytosol	56.07	59.25
VIT_01s0011g00670.t01	Wine grape	cytosol	58.57	58.57
Solyc05g012520.2.1	Tomato	nucleus	50.71	57.26
GSMUA_Achr4P23350_001	Banana	nucleus	48.93	55.24
KRH56857	Soybean	nucleus	58.21	54.33
KRH63266	Soybean	nucleus	56.43	54.3
KRH54642	Soybean	nucleus	56.43	54.11
KRH03094	Soybean	cytosol	56.07	52.33
GSMUA_Achr5P01680_001	Banana	cytosol	49.29	50.0
Zm00001d019505_P001	Maize	nucleus	46.07	45.42
TraesCS7A01G049300.1	Wheat	nucleus, plastid	47.14	45.36
KXG34983	Sorghum	nucleus, plastid	45.36	43.79
TraesCS4A01G435200.1	Wheat	cytosol, plastid	48.21	43.13
TraesCS7D01G044400.1	Wheat	nucleus, plastid	46.43	42.62
Os02t0437200-01	Rice	plasma membrane	20.0	37.58
HORVU7Hr1G008760.1	Barley	nucleus, plastid	31.43	36.67

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100806781	MapMan:22.7.3.1	EMBL:ACUP02000815	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G115100
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000727	UniProt:K7K7S4
ProteinID:KRH70867.1	ProteinID:KRH70868.1	EnsemblPlants:KRH70869	ProteinID:KRH70869	ProteinID:KRH70869.1	PFscan:PS50192
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	SMART:SM00397	SUPFAM:SSF58038	InterPro:T_SNARE_dom	UniParc:UPI000233798B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:11159109..11163007

Molecular Weight (calculated)

31026.2 Da

IEP (calculated)

7.710

GRAVY (calculated)

-1.077

Length

280 amino acids

Sequence
(BLAST)

001: MFGFRKAPAP TESDKKTTLT AEKRTTSEPV LPVAKSKGNY FDDDDDDWGR KPSSSTASKD KDRYKNGFSN SGGLENQSVQ ELENYAVYKS EETTNSVNNC
101: LRIAEDIRGD ATRTLDMLHQ QGEQITRTHN MVVDTEKDLS RGEKLLNNLG GMFSKPWKPK KTREIQGPII TPDKPSKKNV HNKEDREKLG LAPLPKGRSA
201: PTTPPNESSN AYQKVEHEKA KQDDALEDLS GILGDLKGMA IGMGSELDKQ NKALDHLGDD VDELNSRVKG ANQRARKLVG

Best Arabidopsis Sequence Match ( AT1G13890.2 )
(BLAST)

001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK

Arabidopsis Description

SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.