CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026875.1-P	Field mustard	cytosol	61.65	100.0
CDY33792	Canola	cytosol	100.0	100.0
AT1G13890.2	Thale cress	nucleus	85.71	86.69
KRH70869	Soybean	cytosol	66.54	63.21
KRH75005	Soybean	cytosol	65.79	62.5
VIT_01s0011g00670.t01	Wine grape	cytosol	57.52	54.64
CDY42860	Canola	cytosol, plastid	57.14	54.48
CDY47025	Canola	nucleus, plastid	56.02	53.6
PGSC0003DMT400072798	Potato	cytosol	52.26	52.45
Solyc05g012520.2.1	Tomato	nucleus	48.87	52.42
CDY02165	Canola	nucleus	58.27	50.65
CDY23079	Canola	nucleus	57.52	50.33
GSMUA_Achr4P23350_001	Banana	nucleus	46.62	50.0
CDX78314	Canola	cytosol	51.5	46.76
GSMUA_Achr5P01680_001	Banana	cytosol	47.74	46.01
CDX73442	Canola	nucleus	35.71	45.89
TraesCS7A01G049300.1	Wheat	nucleus, plastid	46.99	42.96
Zm00001d019505_P001	Maize	nucleus	45.49	42.61
KXG34983	Sorghum	nucleus, plastid	45.49	41.72
TraesCS7D01G044400.1	Wheat	nucleus, plastid	46.24	40.33
CDX99033	Canola	endoplasmic reticulum, extracellular	51.88	39.43
TraesCS4A01G435200.1	Wheat	cytosol, plastid	46.24	39.3
CDX69988	Canola	endoplasmic reticulum, extracellular	50.38	39.18
HORVU7Hr1G008760.1	Barley	nucleus, plastid	28.2	31.25
CDX81075	Canola	nucleus	11.65	31.0
Os02t0437200-01	Rice	plasma membrane	16.92	30.2

Protein Annotations

EnsemblPlants:CDY16118	EnsemblPlantsGene:GSBRNA2T00090539001	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:CDY16118	ProteinID:CDY16118.1	ProteinID:CDY33792.1
SEG:seg	SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0004EE51DD	UniProt:A0A078H8E2	MapMan:22.7.3.1

Description

BnaC08g40050DBnaA09g45980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8E2]

Coordinates

chrLK032060:+:716687..718229

Molecular Weight (calculated)

29148.2 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.976

Length

266 amino acids

Sequence
(BLAST)

001: MFGFLKSPGN NKVPNESSNN KGGGTINAGR RTSSEPVLIT PDFDEDDDKY KKGFSNSGDL QSQTTEDLEK YAVYKAEETT KGVNNCLKIA EDIRSDATRT
101: LDMLHAQGEQ INRTHVMAVE MDKDLGRGEK LLNSLGGMFS KPWKPKKGKE IAGPMITPDK ASKKSANNKE EREKLGLAAK GRSSSQPIPS DQPTNAMQKV
201: EQEKAKQDDG LSDLSDILGD LKGMALDMGS ELDKQNKALD HLDGDIDELN NRVQGANQRA RHLLSK

Best Arabidopsis Sequence Match ( AT1G13890.2 )
(BLAST)

001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK

Arabidopsis Description

SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.