CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX98070
CDY15993
CDY26558
CDY26559
CDY30074

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	CDX98070	AT1G12360.1	11591731
AT5G07880.1	CDY15993	AT1G12360.1	11591731
AT5G07880.1	CDY26558	AT1G12360.1	11591731
AT5G07880.1	CDY26559	AT1G12360.1	11591731
AT5G07880.1	CDY30074	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99033	Canola	endoplasmic reticulum, extracellular	79.53	77.71
CDX78314	Canola	cytosol	65.79	76.79
CDX73442	Canola	nucleus	45.91	75.85
CDY42860	Canola	cytosol, plastid	57.89	70.97
CDY47025	Canola	nucleus, plastid	55.26	67.99
CDY02165	Canola	nucleus	60.53	67.65
AT5G07880.1	Thale cress	nucleus	49.12	66.93
CDY23079	Canola	nucleus	59.06	66.45
CDX81075	Canola	nucleus	18.42	63.0
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	52.05	58.17
Solyc06g069570.2.1	Tomato	nucleus, plastid	51.46	57.52
GSMUA_Achr4P23350_001	Banana	nucleus	41.52	57.26
KRH56857	Soybean	nucleus	50.0	57.0
PGSC0003DMT400083166	Potato	nucleus	50.58	56.54
KRH03094	Soybean	cytosol	48.83	55.67
VIT_17s0000g06860.t01	Wine grape	nucleus	49.42	55.41
KRH63266	Soybean	nucleus	46.49	54.64
KRH54642	Soybean	nucleus	45.91	53.77
Solyc03g115470.2.1	Tomato	nucleus	52.05	51.9
GSMUA_Achr5P01680_001	Banana	cytosol	41.52	51.45
CDY16118	Canola	cytosol	39.18	50.38
CDY33792	Canola	cytosol	39.18	50.38
Zm00001d019505_P001	Maize	nucleus	38.6	46.48
TraesCS7A01G049300.1	Wheat	nucleus, plastid	39.47	46.39
TraesCS7D01G044400.1	Wheat	nucleus, plastid	40.06	44.92
KXG34983	Sorghum	nucleus, plastid	38.01	44.83
TraesCS4A01G435200.1	Wheat	cytosol, plastid	39.77	43.45
Os02t0437200-01	Rice	plasma membrane	16.96	38.93
HORVU7Hr1G008760.1	Barley	nucleus, plastid	25.73	36.67
Bra009311.1-P	Field mustard	plastid	82.16	27.6

Protein Annotations

EnsemblPlants:CDX69988	EnsemblPlantsGene:GSBRNA2T00136078001	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:CDX69988	ProteinID:CDX69988.1	SEG:seg
SignalP:SignalP-TM	SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0004EDB2EB	MapMan:22.7.3.1	:

Description

BnaA10g23370D

Coordinates

chrLK031790:+:2581449..2583065

Molecular Weight (calculated)

38846.1 Da

IEP (calculated)

8.618

GRAVY (calculated)

-0.705

Length

342 amino acids

Sequence
(BLAST)

001: MTSFFFLFSL RSLIQVCSNC DLLSLAVSDS SLSLFAHICV SYVLAFDQVW ITMFGLKKPL ERLSKHHKPS ASASKSNPFD LDDDNKKHTL KPSNKISPQP
101: TKKNHSFNPF DDDVVDDEVE KRSFKNHFRD SGGVENQTLQ ELESYAVYKS EETTRTVQGC LKVAQGIRSD ATRTLVMLNE QGEKITRTHH KAVDIDHDLS
201: RGEKILGSLG GIFSRTWKPK KTRSITGPVI IREGESPKRR VNHLETREKL GLNHLPKPHS RTHEPLPESA GAYQKIEMEK AKQDDGLADL SDLLSELKNM
301: AIDMGTEIER QNNGLDHLQD DVDELNFRVK QSNQRARRLL RK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.