Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0452500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07880.1 | Os02t0452500-01 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | Os02t0452500-01 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 61.74 | 38.33 |
| Zm00001d019505_P001 | Maize | nucleus | 65.77 | 34.51 |
| KXG34983 | Sorghum | nucleus, plastid | 63.76 | 32.76 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 63.09 | 32.3 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 63.76 | 31.15 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 65.1 | 30.99 |
| CDX81075 | Canola | nucleus | 18.79 | 28.0 |
| Os02t0529500-01 | Rice | plasma membrane | 43.62 | 25.1 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 44.3 | 23.91 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 48.32 | 23.61 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 38.93 | 23.39 |
| Bra005958.1-P | Field mustard | cytosol | 44.97 | 22.95 |
| CDY42860 | Canola | cytosol, plastid | 42.95 | 22.94 |
| CDX78314 | Canola | cytosol | 44.97 | 22.87 |
| KRH63266 | Soybean | nucleus | 43.62 | 22.34 |
| KRH56857 | Soybean | nucleus | 44.97 | 22.33 |
| CDY47025 | Canola | nucleus, plastid | 41.61 | 22.3 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 43.62 | 22.11 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 40.94 | 21.79 |
| CDY23079 | Canola | nucleus | 44.3 | 21.71 |
| Bra012978.1-P | Field mustard | nucleus | 44.3 | 21.64 |
| CDY02165 | Canola | nucleus | 44.3 | 21.57 |
| AT5G07880.1 | Thale cress | nucleus | 36.24 | 21.51 |
| AT5G61210.1 | Thale cress | nucleus | 42.95 | 21.33 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 43.62 | 21.24 |
| PGSC0003DMT400083166 | Potato | nucleus | 43.62 | 21.24 |
| KRH54642 | Soybean | nucleus | 41.61 | 21.23 |
| KRH03094 | Soybean | cytosol | 42.28 | 21.0 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 42.95 | 20.91 |
| KRH70869 | Soybean | cytosol | 37.58 | 20.0 |
| KRH75005 | Soybean | cytosol | 36.91 | 19.64 |
| Solyc03g115470.2.1 | Tomato | nucleus | 44.97 | 19.53 |
| AT1G13890.2 | Thale cress | nucleus | 33.56 | 19.01 |
| CDX73442 | Canola | nucleus | 26.17 | 18.84 |
| Os03t0212400-01 | Rice | cytosol | 29.53 | 18.03 |
| Solyc05g012520.2.1 | Tomato | nucleus | 28.86 | 17.34 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 38.93 | 16.96 |
| CDY16118 | Canola | cytosol | 30.2 | 16.92 |
| CDY33792 | Canola | cytosol | 30.2 | 16.92 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 38.26 | 16.29 |
| PGSC0003DMT400072798 | Potato | cytosol | 28.86 | 16.23 |
| Bra013246.1-P | Field mustard | cytosol | 31.54 | 15.46 |
| Bra032989.1-P | Field mustard | nucleus | 36.24 | 14.1 |
| Bra026875.1-P | Field mustard | cytosol | 8.72 | 7.93 |
| Bra009311.1-P | Field mustard | plastid | 39.6 | 5.8 |
Protein Annotations
| EnsemblPlants:Os02t0437200-01 | EnsemblPlantsGene:Os02g0437200 | Gene3D:1.20.5.110 | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | ProteinID:BAS78464.1 |
| SEG:seg | SUPFAM:SSF58038 | UniParc:UPI0000DF06B1 | UniProt:A0A0P0VIH5 | MapMan:22.7.3.1 | : |
Description
Synaptosomal-associated protein 32SNAP-34. (Os02t0437200-01)
Coordinates
chr2:-:13949431..13951620
Molecular Weight (calculated)
16282.6 Da
IEP (calculated)
7.518
GRAVY (calculated)
-0.932
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRRSFFAS KKPSRSSNPF DSDSDDGGRE QRPARASSVP PPADQRGSLF GGGDGFSASS AAARSRYRND FRDTGGVEAQ SVQELEGYAA YKAEETTQRV
101: QGCVRIAEEM RDTASKSLVT IHQQGQQITR THMMTLDIDQ DLSRVTNTN
101: QGCVRIAEEM RDTASKSLVT IHQQGQQITR THMMTLDIDQ DLSRVTNTN
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.