Factsheet for Bra013246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019760.1-P
Bra026974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	Bra019760.1-P	AT1G12360.1	11591731
AT5G07880.1	Bra026974.1-P	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73442	Canola	nucleus	56.91	83.57
Bra032989.1-P	Field mustard	nucleus	80.26	63.71
Bra005958.1-P	Field mustard	cytosol	58.88	61.3
AT5G07880.1	Thale cress	nucleus	45.39	54.98
Bra029328.1-P	Field mustard	nucleus, plastid	50.66	52.38
Bra012978.1-P	Field mustard	nucleus	50.33	50.16
GSMUA_Achr4P23350_001	Banana	nucleus	37.83	46.37
Solyc06g069570.2.1	Tomato	nucleus, plastid	45.07	44.77
KRH56857	Soybean	nucleus	44.08	44.67
PGSC0003DMT400083166	Potato	nucleus	44.74	44.44
KRH03094	Soybean	cytosol	43.75	44.33
Bra026875.1-P	Field mustard	cytosol	23.36	43.29
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	43.09	42.81
KRH54642	Soybean	nucleus	41.12	42.81
VIT_17s0000g06860.t01	Wine grape	nucleus	42.11	41.97
KRH63266	Soybean	nucleus	39.8	41.58
GSMUA_Achr5P01680_001	Banana	cytosol	37.17	40.94
Solyc03g115470.2.1	Tomato	nucleus	42.76	37.9
TraesCS7A01G049300.1	Wheat	nucleus, plastid	35.86	37.46
Zm00001d019505_P001	Maize	nucleus	34.54	36.97
TraesCS7D01G044400.1	Wheat	nucleus, plastid	36.51	36.39
KXG34983	Sorghum	nucleus, plastid	34.21	35.86
TraesCS4A01G435200.1	Wheat	cytosol, plastid	36.51	35.46
HORVU7Hr1G008760.1	Barley	nucleus, plastid	25.33	32.08
Os02t0437200-01	Rice	plasma membrane	15.46	31.54
Bra009311.1-P	Field mustard	plastid	65.13	19.45

Protein Annotations

EnsemblPlants:Bra013246.1	EnsemblPlants:Bra013246.1-P	EnsemblPlantsGene:Bra013246	Gene3D:1.10.510.10	Gene3D:1.20.5.110	InterPro:Kinase-like_dom_sf
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	SUPFAM:SSF56112	SUPFAM:SSF58038	UniParc:UPI0002540827	UniProt:M4D9T6
MapMan:22.7.3.1	:	:	:	:	:

Description

AT5G61210 (E=2e-082) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding

Coordinates

chrA03:-:19659096..19660244

Molecular Weight (calculated)

34593.1 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.662

Length

304 amino acids

Sequence
(BLAST)

001: MKPDGKSPIT SKDLSRRYFH QLISAVGYCH SRSVFHRDLK FHIISGSPGF NLFEMFSDRV ERFVLGWITA SLPTTKKNHS FNPFDDANDE EEVEKRLKPS
101: FKNHFRESGG VENQTVQELE SYAVYMSDET TKTVQGCLKV AQGIRSDATR TLVMLNEEGE KITRTHHKAV DLDHDLTQGE KLLGSLGGIF SRTWKPKKTR
201: SITGPVITRG ESPKRRVNNL ETRKKLGLNQ LPKPDSRTNE PLPESADAYQ KMEMEKAKQD DGFADLSDLL SELKNMAIDM GTEIERFSFI SLNYCTYIFS
301: MSIP

Best Arabidopsis Sequence Match ( AT5G07880.1 )
(BLAST)

001: MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K

Arabidopsis Description

SNAP29SNAP25 homologous protein SNAP29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.