Factsheet for Bra005958.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019760.1-P
Bra026974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	Bra019760.1-P	AT1G12360.1	11591731
AT5G07880.1	Bra026974.1-P	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78314	Canola	cytosol	95.89	95.56
Bra012978.1-P	Field mustard	nucleus	72.6	69.51
Bra029328.1-P	Field mustard	nucleus, plastid	69.86	69.39
AT5G07880.1	Thale cress	nucleus	57.88	67.33
Bra013246.1-P	Field mustard	cytosol	61.3	58.88
KRH56857	Soybean	nucleus	59.93	58.33
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	60.62	57.84
PGSC0003DMT400083166	Potato	nucleus	60.27	57.52
Solyc06g069570.2.1	Tomato	nucleus, plastid	60.27	57.52
GSMUA_Achr4P23350_001	Banana	nucleus	47.95	56.45
KRH03094	Soybean	cytosol	57.53	56.0
Bra026875.1-P	Field mustard	cytosol	31.16	55.49
VIT_17s0000g06860.t01	Wine grape	nucleus	57.88	55.41
GSMUA_Achr5P01680_001	Banana	cytosol	52.05	55.07
KRH54642	Soybean	nucleus	54.11	54.11
KRH63266	Soybean	nucleus	53.77	53.95
Solyc03g115470.2.1	Tomato	nucleus	60.96	51.9
Bra032989.1-P	Field mustard	nucleus	67.47	51.44
Zm00001d019505_P001	Maize	nucleus	47.26	48.59
TraesCS7A01G049300.1	Wheat	nucleus, plastid	48.29	48.45
KXG34983	Sorghum	nucleus, plastid	46.23	46.55
TraesCS7D01G044400.1	Wheat	nucleus, plastid	48.29	46.23
TraesCS4A01G435200.1	Wheat	cytosol, plastid	48.29	45.05
Os02t0437200-01	Rice	plasma membrane	22.95	44.97
HORVU7Hr1G008760.1	Barley	nucleus, plastid	32.19	39.17
Bra009311.1-P	Field mustard	plastid	80.14	22.99

Protein Annotations

EnsemblPlants:Bra005958.1	EnsemblPlants:Bra005958.1-P	EnsemblPlantsGene:Bra005958	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	SEG:seg	SMART:SM00397
SUPFAM:SSF58038	UniParc:UPI000253F6D6	UniProt:M4CP20	MapMan:22.7.3.1	:	:

Description

AT5G61210 (E=5e-102) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding

Coordinates

chrA03:-:1411011..1412214

Molecular Weight (calculated)

32697.3 Da

IEP (calculated)

6.894

GRAVY (calculated)

-0.983

Length

292 amino acids

Sequence
(BLAST)

001: MFGLKQPKPA GSGPSGSNPF DSDDDTLKPS NRINPEPSLA AKNLSLNSFD DDDCDEKRFT TSSKPSLDLD AKSRYRNGFR DSGGVENQSV QELESYAVYK
101: SQETTKTVQG CLKVAEEIRS DAARTLVMLN EQGEKITRTH HKTVDIDHDL SRGEKLLGSL AGIFSPTWKP KKTRSITGPV ITKGESPKRR VNHLETREKL
201: GLNHLPKPQS RTHEPLPESA DAYQKLEMEK AKQDDGLADL SDLLSELKNM AVDMGTEIER QNNGLDHLQD DVDELNFRVK QSNQRARRLL RK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.