Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_13s0019g05000.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07880.1 | VIT_13s0019g05000.t01 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | VIT_13s0019g05000.t01 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56857 | Soybean | nucleus | 66.56 | 67.67 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 66.89 | 66.67 |
| PGSC0003DMT400083166 | Potato | nucleus | 66.23 | 66.01 |
| KRH03094 | Soybean | cytosol | 64.92 | 66.0 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 65.25 | 65.03 |
| CDY02165 | Canola | nucleus | 63.93 | 63.73 |
| Bra012978.1-P | Field mustard | nucleus | 63.61 | 63.61 |
| CDY42860 | Canola | cytosol, plastid | 57.7 | 63.08 |
| KRH63266 | Soybean | nucleus | 60.0 | 62.89 |
| AT5G61210.1 | Thale cress | nucleus | 61.31 | 62.33 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 60.0 | 62.24 |
| CDY23079 | Canola | nucleus | 61.64 | 61.84 |
| KRH54642 | Soybean | nucleus | 59.02 | 61.64 |
| CDY47025 | Canola | nucleus, plastid | 56.07 | 61.51 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 49.84 | 61.29 |
| Solyc03g115470.2.1 | Tomato | nucleus | 68.52 | 60.93 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 55.08 | 60.0 |
| Bra005958.1-P | Field mustard | cytosol | 55.41 | 57.88 |
| CDX78314 | Canola | cytosol | 55.08 | 57.34 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 51.8 | 57.25 |
| Zm00001d019505_P001 | Maize | nucleus | 50.49 | 54.23 |
| AT5G07880.1 | Thale cress | nucleus | 44.26 | 53.78 |
| KXG34983 | Sorghum | nucleus, plastid | 50.82 | 53.45 |
| CDX73442 | Canola | nucleus | 36.07 | 53.14 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 50.16 | 52.58 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 51.48 | 50.16 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 49.84 | 49.84 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 55.41 | 49.42 |
| Os02t0437200-01 | Rice | plasma membrane | 23.61 | 48.32 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 55.41 | 48.29 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 36.07 | 45.83 |
| CDX81075 | Canola | nucleus | 14.75 | 45.0 |
| Bra013246.1-P | Field mustard | cytosol | 41.97 | 42.11 |
| Bra032989.1-P | Field mustard | nucleus | 47.87 | 38.12 |
| Bra009311.1-P | Field mustard | plastid | 56.07 | 16.8 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:100246765 | wikigene:100246765 | MapMan:22.7.3.1 | ProteinID:CCB43056 | ProteinID:CCB43056.1 |
| UniProt:F6GT32 | EMBL:FN594950 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| InterPro:IPR000727 | EntrezGene:LOC100246765 | wikigene:LOC100246765 | PFscan:PS50192 | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 |
| SMART:SM00397 | SUPFAM:SSF58038 | TIGR:TC56008 | InterPro:T_SNARE_dom | UniParc:UPI00015C8915 | ArrayExpress:VIT_17s0000g06860 |
| EnsemblPlantsGene:VIT_17s0000g06860 | EnsemblPlants:VIT_17s0000g06860.t01 | unigene:Vvi.340 | RefSeq:XP_002284486 | RefSeq:XP_002284486.1 | SEG:seg |
Description
No Description!
Coordinates
chr17:+:7520817..7524459
Molecular Weight (calculated)
33986.9 Da
IEP (calculated)
7.139
GRAVY (calculated)
-0.896
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGLKKSPLH KFAKHNSVDP GYPHSSSTNP FDSHDDLDGK KALKPSRRTS SEPMLTTQPN PNPFDDDVGK GSSSSSSNFL LSSERNKYKN DFHDSGGIEN
101: QSVQELENYA VYKAEENTKM VNNCLKIAED IREDATKTLV TLHQQGQQIT RTHMNAADID HDLSRGEKLL GSLGGIFSKT WKPIKTRPIT GPITTRDDLS
201: YRKGSHMEQR EKLGLAPAPK GRLATRTPPP EPTNALQKVE VEHAKQDDTL SDLSNLLDEL KYMAVDMGTE IESHNRALAP MEDDVDVLSI RIKDGNQRAR
301: RLLGK
101: QSVQELENYA VYKAEENTKM VNNCLKIAED IREDATKTLV TLHQQGQQIT RTHMNAADID HDLSRGEKLL GSLGGIFSKT WKPIKTRPIT GPITTRDDLS
201: YRKGSHMEQR EKLGLAPAPK GRLATRTPPP EPTNALQKVE VEHAKQDDTL SDLSNLLDEL KYMAVDMGTE IESHNRALAP MEDDVDVLSI RIKDGNQRAR
301: RLLGK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.