Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61210.1 | CDX98070 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY15993 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY26558 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY26559 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY30074 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42860 | Canola | cytosol, plastid | 90.29 | 89.96 |
| CDY23079 | Canola | nucleus | 87.05 | 79.61 |
| AT5G61210.1 | Thale cress | nucleus | 84.53 | 78.33 |
| CDY02165 | Canola | nucleus | 83.81 | 76.14 |
| CDX73442 | Canola | nucleus | 47.12 | 63.28 |
| CDX78314 | Canola | cytosol | 65.83 | 62.46 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 54.32 | 60.89 |
| PGSC0003DMT400083166 | Potato | nucleus | 63.31 | 57.52 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 62.23 | 56.54 |
| KRH56857 | Soybean | nucleus | 60.79 | 56.33 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 61.51 | 56.07 |
| CDY16118 | Canola | cytosol | 53.6 | 56.02 |
| CDY33792 | Canola | cytosol | 53.6 | 56.02 |
| KRH03094 | Soybean | cytosol | 60.07 | 55.67 |
| KRH54642 | Soybean | nucleus | 58.27 | 55.48 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 67.99 | 55.26 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 69.42 | 55.14 |
| KRH63266 | Soybean | nucleus | 57.55 | 54.98 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 60.43 | 54.9 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 53.24 | 53.62 |
| CDX81075 | Canola | nucleus | 19.06 | 53.0 |
| Solyc03g115470.2.1 | Tomato | nucleus | 60.79 | 49.27 |
| Zm00001d019505_P001 | Maize | nucleus | 49.64 | 48.59 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 50.36 | 48.11 |
| KXG34983 | Sorghum | nucleus, plastid | 49.64 | 47.59 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 51.44 | 46.89 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 51.08 | 45.37 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 36.33 | 42.08 |
| Os02t0437200-01 | Rice | plasma membrane | 22.3 | 41.61 |
Protein Annotations
| EnsemblPlants:CDY47025 | EnsemblPlantsGene:GSBRNA2T00086539001 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | ProteinID:CDY47025 | ProteinID:CDY47025.1 | SEG:seg |
| SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0004EE94B7 | UniProt:A0A078I817 | MapMan:22.7.3.1 | : |
Description
BnaC02g42100DBnaC02g42100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I817]
Coordinates
chrLK032694:+:162190..163930
Molecular Weight (calculated)
31226.5 Da
IEP (calculated)
6.812
GRAVY (calculated)
-1.016
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGLNKSPAN LPKHNSADPG FHKPNPFDSD DTTLNPSKRT SSEPSLAIMT NPFDEVEKGY QYKNNFNDSG GVENQSVQEL EGYAVYKAEE TTKSVQGSLK
101: VAEEIRSDAT RTLVMLHDQG EQITRTHHKA AEIDHDLSRG EKLLGSLGGM FSKTWKPKKT RPINGPVITR DHSPTRRVNH LEKREKLGLS PPKAQSRTRE
201: PLPESADAYQ RVEMEKAKQD DGLSDLSDLL GELKNMAVDM GSEIGRQKDG LDYLHDDVDE LNYRVQQSNQ RASRLLRK
101: VAEEIRSDAT RTLVMLHDQG EQITRTHHKA AEIDHDLSRG EKLLGSLGGM FSKTWKPKKT RPINGPVITR DHSPTRRVNH LEKREKLGLS PPKAQSRTRE
201: PLPESADAYQ RVEMEKAKQD DGLSDLSDLL GELKNMAVDM GSEIGRQKDG LDYLHDDVDE LNYRVQQSNQ RASRLLRK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.