Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61210.1 | CDX98070 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY15993 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY26558 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY26559 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY30074 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47025 | Canola | nucleus, plastid | 89.96 | 90.29 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 94.98 | 90.14 |
| CDY02165 | Canola | nucleus | 87.1 | 79.41 |
| CDY23079 | Canola | nucleus | 86.38 | 79.28 |
| AT5G61210.1 | Thale cress | nucleus | 84.23 | 78.33 |
| CDX78314 | Canola | cytosol | 70.61 | 67.24 |
| CDX73442 | Canola | nucleus | 48.75 | 65.7 |
| PGSC0003DMT400083166 | Potato | nucleus | 65.95 | 60.13 |
| KRH56857 | Soybean | nucleus | 64.52 | 60.0 |
| KRH03094 | Soybean | cytosol | 64.16 | 59.67 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 64.87 | 59.15 |
| CDX81075 | Canola | nucleus | 21.15 | 59.0 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 52.33 | 58.87 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 73.12 | 58.29 |
| KRH54642 | Soybean | nucleus | 60.93 | 58.22 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 70.97 | 57.89 |
| KRH63266 | Soybean | nucleus | 60.22 | 57.73 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 63.08 | 57.7 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 62.72 | 57.19 |
| CDY16118 | Canola | cytosol | 54.48 | 57.14 |
| CDY33792 | Canola | cytosol | 54.48 | 57.14 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 52.69 | 53.26 |
| Solyc03g115470.2.1 | Tomato | nucleus | 63.08 | 51.31 |
| Zm00001d019505_P001 | Maize | nucleus | 50.9 | 50.0 |
| KXG34983 | Sorghum | nucleus, plastid | 50.18 | 48.28 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 50.18 | 48.11 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 51.61 | 47.21 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 51.25 | 45.69 |
| Os02t0437200-01 | Rice | plasma membrane | 22.94 | 42.95 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 36.92 | 42.92 |
Protein Annotations
| EnsemblPlants:CDY42860 | EnsemblPlantsGene:GSBRNA2T00075556001 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | ProteinID:CDY42860 | ProteinID:CDY42860.1 | SEG:seg |
| SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0004EE9236 | UniProt:A0A078HWL8 | MapMan:22.7.3.1 | : |
Description
BnaAnng06850DBnaAnng06850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWL8]
Coordinates
chrLK032536:+:173475..175358
Molecular Weight (calculated)
31303.7 Da
IEP (calculated)
7.435
GRAVY (calculated)
-1.008
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGSKKSPAN LPKHNSADPG FHKPNPFDSD DTTLNPSKRT SSEPSLAIMT NPFDEVEKGH QYKNNFRDSG GVENQSVQEL EGYAVYKAEE TTKSVQGCLK
101: VAEEIRSDAT RTLVMLHDQG EQITRTHHKA VEIDHDLSRG EKLLGSLGGM FSKTWKPKKT RPINGPVISR DHSPTRRVNH LEKREKLGLS PAPKAQSRTR
201: EPLPESADAF QRLEMEKAKQ DDGLSDLSDL LGELKNMAVD MGSEIGRQKD GLDHLHDDVD ELNYRVQQSN QRASRLLRK
101: VAEEIRSDAT RTLVMLHDQG EQITRTHHKA VEIDHDLSRG EKLLGSLGGM FSKTWKPKKT RPINGPVISR DHSPTRRVNH LEKREKLGLS PAPKAQSRTR
201: EPLPESADAF QRLEMEKAKQ DDGLSDLSDL LGELKNMAVD MGSEIGRQKD GLDHLHDDVD ELNYRVQQSN QRASRLLRK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.