Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07880.1 | CDX98070 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY15993 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY26558 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY26559 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY30074 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73442 | Canola | nucleus | 61.0 | 29.47 |
| CDX78314 | Canola | cytosol | 73.0 | 24.91 |
| CDY42860 | Canola | cytosol, plastid | 59.0 | 21.15 |
| AT5G07880.1 | Thale cress | nucleus | 52.0 | 20.72 |
| CDY23079 | Canola | nucleus | 58.0 | 19.08 |
| CDY47025 | Canola | nucleus, plastid | 53.0 | 19.06 |
| CDY02165 | Canola | nucleus | 58.0 | 18.95 |
| Os02t0437200-01 | Rice | plasma membrane | 28.0 | 18.79 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 65.0 | 18.57 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 63.0 | 18.42 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 42.0 | 16.94 |
| KRH54642 | Soybean | nucleus | 48.0 | 16.44 |
| KRH56857 | Soybean | nucleus | 49.0 | 16.33 |
| KRH03094 | Soybean | cytosol | 48.0 | 16.0 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 48.0 | 15.69 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 37.0 | 15.42 |
| KRH63266 | Soybean | nucleus | 44.0 | 15.12 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 43.0 | 14.78 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 45.0 | 14.75 |
| PGSC0003DMT400083166 | Potato | nucleus | 45.0 | 14.71 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 45.0 | 14.71 |
| KXG34983 | Sorghum | nucleus, plastid | 41.0 | 14.14 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 43.0 | 14.1 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 38.0 | 13.77 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 43.0 | 13.74 |
| Zm00001d019505_P001 | Maize | nucleus | 39.0 | 13.73 |
| Solyc03g115470.2.1 | Tomato | nucleus | 47.0 | 13.7 |
| CDY33792 | Canola | cytosol | 31.0 | 11.65 |
| CDY16118 | Canola | cytosol | 31.0 | 11.65 |
Protein Annotations
| EnsemblPlants:CDX81075 | EnsemblPlantsGene:GSBRNA2T00134517001 | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | ProteinID:CDX81075 | ProteinID:CDX81075.1 |
| SEG:seg | UniParc:UPI0004EF0301 | MapMan:35.2 | : | : | : |
Description
BnaC03g03290D
Coordinates
chrLK031823:-:1591936..1593042
Molecular Weight (calculated)
11635.5 Da
IEP (calculated)
8.863
GRAVY (calculated)
-1.194
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MDFPLKYAWK SRYRSEFRDS GGVENQSVQE LESYAVYKSQ ETTKTVQGVS ESESPKRRVN HLETREKLGL NHFHKPQSRT PPPPPPSESP DAYQKLEVWI
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.