CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04038
KRH28021
KRH57307
KRH77416

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	KRH04038	AT1G12360.1	11591731
AT5G07880.1	KRH28021	AT1G12360.1	11591731
AT5G07880.1	KRH57307	AT1G12360.1	11591731
AT5G07880.1	KRH77416	AT1G12360.1	11591731
AT5G61210.1	KRH04038	AT1G12360.1	11591731
AT5G61210.1	KRH28021	AT1G12360.1	11591731
AT5G61210.1	KRH57307	AT1G12360.1	11591731
AT5G61210.1	KRH77416	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63266	Soybean	nucleus	87.67	87.97
KRH56857	Soybean	nucleus	72.95	71.0
KRH03094	Soybean	cytosol	72.6	70.67
GSMUA_Achr4P23350_001	Banana	nucleus	52.05	61.29
CDY42860	Canola	cytosol, plastid	58.22	60.93
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	63.01	60.13
Solyc06g069570.2.1	Tomato	nucleus, plastid	62.33	59.48
PGSC0003DMT400083166	Potato	nucleus	62.33	59.48
Bra029328.1-P	Field mustard	nucleus, plastid	59.59	59.18
VIT_17s0000g06860.t01	Wine grape	nucleus	61.64	59.02
AT5G61210.1	Thale cress	nucleus	59.93	58.33
CDY47025	Canola	nucleus, plastid	55.48	58.27
CDY02165	Canola	nucleus	60.96	58.17
Bra012978.1-P	Field mustard	nucleus	60.27	57.7
CDY23079	Canola	nucleus	59.59	57.24
KRH70869	Soybean	cytosol	54.11	56.43
GSMUA_Achr5P01680_001	Banana	cytosol	52.05	55.07
Solyc03g115470.2.1	Tomato	nucleus	64.04	54.52
KRH75005	Soybean	cytosol	52.05	54.29
Bra005958.1-P	Field mustard	cytosol	54.11	54.11
CDX78314	Canola	cytosol	53.42	53.24
CDX73442	Canola	nucleus	37.67	53.14
AT5G07880.1	Thale cress	nucleus	44.86	52.19
TraesCS7A01G049300.1	Wheat	nucleus, plastid	51.37	51.55
Zm00001d019505_P001	Maize	nucleus	50.0	51.41
KXG34983	Sorghum	nucleus, plastid	51.03	51.38
TraesCS4A01G435200.1	Wheat	cytosol, plastid	51.71	48.24
TraesCS7D01G044400.1	Wheat	nucleus, plastid	50.34	48.2
CDX81075	Canola	nucleus	16.44	48.0
CDX69988	Canola	endoplasmic reticulum, extracellular	53.77	45.91
CDX99033	Canola	endoplasmic reticulum, extracellular	54.45	45.43
HORVU7Hr1G008760.1	Barley	nucleus, plastid	34.93	42.5
Os02t0437200-01	Rice	plasma membrane	21.23	41.61
Bra013246.1-P	Field mustard	cytosol	42.81	41.12
Bra032989.1-P	Field mustard	nucleus	46.92	35.77
Bra009311.1-P	Field mustard	plastid	53.42	15.32

Protein Annotations

EMBL:ACUP02003556	EnsemblPlants:KRH54642	EnsemblPlantsGene:GLYMA_06G200100	EntrezGene:100806698	Gene3D:1.20.5.110	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR19305
PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:KRH54641.1	ProteinID:KRH54642	ProteinID:KRH54642.1	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0001BA8343	UniProt:I1KCY1	MapMan:22.7.3.1	:

Description

hypothetical protein

Coordinates

chr6:-:18322346..18324849

Molecular Weight (calculated)

32118.2 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.938

Length

292 amino acids

Sequence
(BLAST)

001: MFGSKKTPLR DAKPSSVGHA HNPFDSDEET NDKKYNSSKK TLTNTNPFDD EVDVDATGHS SSSSYGLSSS HRNRYKSDFR DSGGLESQSV QELENYAVYK
101: AEETTNSVNS CLKIAEEMRE DATKTLVMLH HQGEQITRSH HVAADIDHDL SRGEKLLGSL GGMFSKTWKP KKTGTITGPV VFGDDPVRRK GNHLEQREKL
201: GLTSAPKGQS KSRPTLSEPS NALEKVEVEK GKQDDALSDL SDLLGELKGM AIDMGSEIGR QNQALDGFDN DMEKLTVRVN GANQRSHRLL GK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.