CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04038
KRH28021
KRH57307
KRH77416

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	KRH04038	AT1G12360.1	11591731
AT5G07880.1	KRH28021	AT1G12360.1	11591731
AT5G07880.1	KRH57307	AT1G12360.1	11591731
AT5G07880.1	KRH77416	AT1G12360.1	11591731
AT5G61210.1	KRH04038	AT1G12360.1	11591731
AT5G61210.1	KRH28021	AT1G12360.1	11591731
AT5G61210.1	KRH57307	AT1G12360.1	11591731
AT5G61210.1	KRH77416	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03094	Soybean	cytosol	89.67	89.67
KRH63266	Soybean	nucleus	72.0	74.23
KRH54642	Soybean	nucleus	71.0	72.95
VIT_17s0000g06860.t01	Wine grape	nucleus	67.67	66.56
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	67.67	66.34
GSMUA_Achr4P23350_001	Banana	nucleus	54.33	65.73
PGSC0003DMT400083166	Potato	nucleus	67.0	65.69
Solyc06g069570.2.1	Tomato	nucleus, plastid	66.67	65.36
CDY42860	Canola	cytosol, plastid	60.0	64.52
CDY02165	Canola	nucleus	64.0	62.75
Bra012978.1-P	Field mustard	nucleus	63.67	62.62
Bra029328.1-P	Field mustard	nucleus, plastid	61.33	62.59
AT5G61210.1	Thale cress	nucleus	62.0	62.0
CDY23079	Canola	nucleus	62.67	61.84
CDY47025	Canola	nucleus, plastid	56.33	60.79
Solyc03g115470.2.1	Tomato	nucleus	68.67	60.06
Bra005958.1-P	Field mustard	cytosol	58.33	59.93
CDX78314	Canola	cytosol	57.33	58.7
KRH70869	Soybean	cytosol	54.33	58.21
GSMUA_Achr5P01680_001	Banana	cytosol	52.67	57.25
KRH75005	Soybean	cytosol	52.67	56.43
CDX73442	Canola	nucleus	38.67	56.04
AT5G07880.1	Thale cress	nucleus	46.67	55.78
Zm00001d019505_P001	Maize	nucleus	52.0	54.93
TraesCS7A01G049300.1	Wheat	nucleus, plastid	52.33	53.95
KXG34983	Sorghum	nucleus, plastid	51.33	53.1
TraesCS7D01G044400.1	Wheat	nucleus, plastid	53.0	52.13
TraesCS4A01G435200.1	Wheat	cytosol, plastid	52.67	50.48
CDX99033	Canola	endoplasmic reticulum, extracellular	58.33	50.0
CDX69988	Canola	endoplasmic reticulum, extracellular	57.0	50.0
CDX81075	Canola	nucleus	16.33	49.0
Os02t0437200-01	Rice	plasma membrane	22.33	44.97
Bra013246.1-P	Field mustard	cytosol	44.67	44.08
HORVU7Hr1G008760.1	Barley	nucleus, plastid	34.0	42.5
Bra032989.1-P	Field mustard	nucleus	49.67	38.9
Bra009311.1-P	Field mustard	plastid	57.67	16.99

Protein Annotations

EMBL:ACUP02002798	EnsemblPlants:KRH56857	EnsemblPlantsGene:GLYMA_05G023100	EntrezGene:100809874	Gene3D:1.20.5.110	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:KRH56857	ProteinID:KRH56857.1	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0001BA5F77	UniProt:I1JZK8	MapMan:22.7.3.1	:

Description

hypothetical protein

Coordinates

chr5:+:2020400..2023401

Molecular Weight (calculated)

33363.7 Da

IEP (calculated)

7.168

GRAVY (calculated)

-1.001

Length

300 amino acids

Sequence
(BLAST)

001: MSGSKKSPLK VAKPSSAESW TNPFDSDDEG KDSKKYSSSR KTSSERALAT LEVNTNPFDD DIDANKKSSS TSYAFQSANR NRYKNDFRDS GGLENQSVQE
101: LESYAVYKAE ETTNSVNNCL KIAENIREDA TKTLVTLEQQ GEQITRSHHV AADIDHDLSR GEKLLGSLGG LFSKTWKPKK TRAITGPVIV GDDPVRRKDN
201: HLEQRDKLGL TSAPKGQSKL RTPPPEPTNA LEKVEVEKKK QDDALSDLSD LLGELKDMAV DMGSEIERHN KALNHLYDDV DELNFRVKGA NQRGRRLLGK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.