Factsheet for PGSC0003DMT400063113

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115470.2.1	Tomato	nucleus	92.81	82.8
PGSC0003DMT400083166	Potato	nucleus	73.86	73.86
KRH56857	Soybean	nucleus	66.34	67.67
VIT_17s0000g06860.t01	Wine grape	nucleus	66.67	66.89
KRH03094	Soybean	cytosol	64.05	65.33
GSMUA_Achr4P23350_001	Banana	nucleus	52.94	65.32
CDY02165	Canola	nucleus	64.05	64.05
Bra012978.1-P	Field mustard	nucleus	63.4	63.61
KRH63266	Soybean	nucleus	60.46	63.57
CDY23079	Canola	nucleus	62.75	63.16
KRH54642	Soybean	nucleus	60.13	63.01
CDY42860	Canola	cytosol, plastid	57.19	62.72
AT5G61210.1	Thale cress	nucleus	60.78	62.0
Bra029328.1-P	Field mustard	nucleus, plastid	58.5	60.88
Bra005958.1-P	Field mustard	cytosol	57.84	60.62
CDY47025	Canola	nucleus, plastid	54.9	60.43
CDX78314	Canola	cytosol	57.19	59.73
AT5G07880.1	Thale cress	nucleus	46.73	56.97
GSMUA_Achr5P01680_001	Banana	cytosol	50.65	56.16
CDX73442	Canola	nucleus	37.91	56.04
Zm00001d019505_P001	Maize	nucleus	48.69	52.46
CDX99033	Canola	endoplasmic reticulum, extracellular	59.8	52.29
TraesCS7A01G049300.1	Wheat	nucleus, plastid	49.67	52.23
CDX69988	Canola	endoplasmic reticulum, extracellular	58.17	52.05
PGSC0003DMT400072798	Potato	cytosol	44.77	51.7
KXG34983	Sorghum	nucleus, plastid	48.04	50.69
TraesCS7D01G044400.1	Wheat	nucleus, plastid	49.67	49.84
TraesCS4A01G435200.1	Wheat	cytosol, plastid	50.0	48.88
CDX81075	Canola	nucleus	15.69	48.0
Bra013246.1-P	Field mustard	cytosol	42.81	43.09
Os02t0437200-01	Rice	plasma membrane	20.91	42.95
HORVU7Hr1G008760.1	Barley	nucleus, plastid	33.01	42.08
Bra032989.1-P	Field mustard	nucleus	49.67	39.69
Bra009311.1-P	Field mustard	plastid	58.82	17.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400063113	EnsemblPlantsGene:PGSC0003DMG400024552	EntrezGene:102601696	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	PGSC:PGSC0003DMG400024552	RefSeq:XP_006345160.1	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0002949FF0	UniProt:M1CA34	MapMan:22.7.3.1	:

Description

Synaptosomal associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024552]

Coordinates

chr3:+:55345620..55349745

Molecular Weight (calculated)

34553.1 Da

IEP (calculated)

7.925

GRAVY (calculated)

-1.052

Length

306 amino acids

Sequence
(BLAST)

001: MFRLKKLPLH RNARNHSVNP GSGGYSSSNP FDSDNESDNK ETIKPARRTS SEPSLITPHL STNPFDDDDD IKRTHSSAYS ATSTERNRFK NEFRDSGGFE
101: NQTVQELENY AVHKAEETTK TVNNCLRIAE DIRQDATKTV IALHQQGEQI TRTHLTAADI EHDLSRGEKL LGTLGSYFSK TWKSKKIRSI TGPVITRDDP
201: IQRRGNHLEQ REKLGLSSAP KERSSSRTPP QEPTNALQKV EVEHAKQDDA LSDLSNLLGE LKHMAIDMGS EIERQNKSLD HFQDDVDELN FRVKGANQRG
301: RRLLGK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.