Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g012520.2.1 | Tomato | nucleus | 81.51 | 87.1 |
| Bra026875.1-P | Field mustard | cytosol | 37.36 | 60.37 |
| KRH70869 | Soybean | cytosol | 59.25 | 56.07 |
| AT1G13890.2 | Thale cress | nucleus | 54.34 | 54.75 |
| KRH75005 | Soybean | cytosol | 57.74 | 54.64 |
| CDY16118 | Canola | cytosol | 52.45 | 52.26 |
| CDY33792 | Canola | cytosol | 52.45 | 52.26 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 55.09 | 52.14 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 43.4 | 46.37 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 51.7 | 44.77 |
| PGSC0003DMT400083166 | Potato | nucleus | 49.06 | 42.48 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 44.15 | 42.39 |
| KXG34983 | Sorghum | nucleus, plastid | 44.53 | 40.69 |
| Zm00001d019505_P001 | Maize | nucleus | 43.4 | 40.49 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 44.15 | 40.21 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 43.77 | 37.06 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 41.51 | 36.07 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 27.92 | 30.83 |
| Os02t0437200-01 | Rice | plasma membrane | 16.23 | 28.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072798 | EnsemblPlantsGene:PGSC0003DMG400028324 | EntrezGene:102579103 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom |
| ncoils:Coil | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | PGSC:PGSC0003DMG400028324 | RefSeq:XP_006348809.1 |
| SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0002959260 | UniProt:M1CQY7 | MapMan:22.7.3.1 |
Description
SNAP25 homologous protein SNAP30 [Source:PGSC_GENE;Acc:PGSC0003DMG400028324]
Coordinates
chr5:-:342865..345827
Molecular Weight (calculated)
29062.0 Da
IEP (calculated)
7.169
GRAVY (calculated)
-1.058
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGFRKKADS ATPDEKNGTK TGRRTSSEPV LVTPDDDDFG TSSSSGVTRN KHKSKTEDFD NMSMQELEGY AVDQAKETTS SVNNCLKIAE DIRQEGAQTL
101: DTLHKQGEQI HRTHMMAVDM DRDLSKGEKL LNNLGGMFAM PWKAKKTHDI KGPRTSKDDS HKGKGSASER EKLGLSNGKK GKSASSTPPP ESMNAMQQIE
201: SEKSKQDDAL SDLSNILGDL KGMAVDMGSE LDKQNKAIDD LDKDVDELNS RVKGANRRAR QIVGK
101: DTLHKQGEQI HRTHMMAVDM DRDLSKGEKL LNNLGGMFAM PWKAKKTHDI KGPRTSKDDS HKGKGSASER EKLGLSNGKK GKSASSTPPP ESMNAMQQIE
201: SEKSKQDDAL SDLSNILGDL KGMAVDMGSE LDKQNKAIDD LDKDVDELNS RVKGANRRAR QIVGK
001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
Arabidopsis Description
SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.