Factsheet for VIT_01s0011g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026875.1-P	Field mustard	cytosol	36.79	62.8
AT1G13890.2	Thale cress	nucleus	56.07	59.7
KRH75005	Soybean	cytosol	58.93	58.93
GSMUA_Achr4P23350_001	Banana	nucleus	52.14	58.87
KRH70869	Soybean	cytosol	58.57	58.57
CDY16118	Canola	cytosol	54.64	57.52
CDY33792	Canola	cytosol	54.64	57.52
Solyc05g012520.2.1	Tomato	nucleus	49.29	55.65
PGSC0003DMT400072798	Potato	cytosol	52.14	55.09
VIT_17s0000g06860.t01	Wine grape	nucleus	60.0	55.08
GSMUA_Achr5P01680_001	Banana	cytosol	53.57	54.35
Zm00001d019505_P001	Maize	nucleus	51.07	50.35
KXG34983	Sorghum	nucleus, plastid	50.36	48.62
TraesCS7A01G049300.1	Wheat	nucleus, plastid	47.5	45.7
TraesCS7D01G044400.1	Wheat	nucleus, plastid	48.57	44.59
TraesCS4A01G435200.1	Wheat	cytosol, plastid	48.57	43.45
Os02t0437200-01	Rice	plasma membrane	21.79	40.94
HORVU7Hr1G008760.1	Barley	nucleus, plastid	32.14	37.5

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100249104	wikigene:100249104	MapMan:22.7.3.1	UniProt:A5BGC6	EMBL:AM458569
ProteinID:CAN70141	ProteinID:CAN70141.1	ProteinID:CCB51070	ProteinID:CCB51070.1	ncoils:Coil	EMBL:FN595752
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000727	EntrezGene:LOC100249104
wikigene:LOC100249104	PFscan:PS50192	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	SMART:SM00397	SUPFAM:SSF58038
InterPro:T_SNARE_dom	UniParc:UPI0001520CBB	ArrayExpress:VIT_01s0011g00670	EnsemblPlantsGene:VIT_01s0011g00670	EnsemblPlants:VIT_01s0011g00670.t01	unigene:Vvi.20628
RefSeq:XP_002269423	RefSeq:XP_002269423.2	RefSeq:XP_010649550.1	RefSeq:XP_010649553.1	RefSeq:XP_019076508.1	:

Description

No Description!

Coordinates

chr1:-:593582..596330

Molecular Weight (calculated)

30759.1 Da

IEP (calculated)

6.068

GRAVY (calculated)

-0.886

Length

280 amino acids

Sequence
(BLAST)

001: MMFGFMKSPM NKVFKHNAVD PGPGPSNPFD SDTENDSNQI HRDSKRAASE PTLPGLNFNI EDQYKNDFRN SGGLENQSVQ ELENYAAYKA KETTKTVNNC
101: LKIAEDIRED ATNTLATLHQ QGEQITRTHM MAADMDKDLS KGEKLLGNLG GMFSRTWKPK KSKDITGPLI TSEDSKGGPA SLEQRQKLGL APAPKGRTTS
201: RAPGPEPTAA MQQVEGEMLK QDDALSDLSN ILGDLKNMAA DMGSELDRQN KALDHLSDDV DELNARVKGA NQRARRLLAK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.