Factsheet for Solyc05g012520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072798	Potato	cytosol	87.1	81.51
Bra026875.1-P	Field mustard	cytosol	41.53	62.8
KRH70869	Soybean	cytosol	57.26	50.71
AT1G13890.2	Thale cress	nucleus	53.63	50.57
KRH75005	Soybean	cytosol	56.45	50.0
VIT_01s0011g00670.t01	Wine grape	cytosol	55.65	49.29
CDY16118	Canola	cytosol	52.42	48.87
CDY33792	Canola	cytosol	52.42	48.87
GSMUA_Achr4P23350_001	Banana	nucleus	46.77	46.77
KXG34983	Sorghum	nucleus, plastid	49.19	42.07
Zm00001d019505_P001	Maize	nucleus	47.98	41.9
GSMUA_Achr5P01680_001	Banana	cytosol	45.97	41.3
Solyc06g069570.2.1	Tomato	nucleus, plastid	49.6	40.2
TraesCS7A01G049300.1	Wheat	nucleus, plastid	45.56	38.83
Solyc03g115470.2.1	Tomato	nucleus	52.42	37.9
TraesCS7D01G044400.1	Wheat	nucleus, plastid	45.97	37.38
TraesCS4A01G435200.1	Wheat	cytosol, plastid	46.37	36.74
HORVU7Hr1G008760.1	Barley	nucleus, plastid	29.03	30.0
Os02t0437200-01	Rice	plasma membrane	17.34	28.86

Protein Annotations

EnsemblPlants:Solyc05g012520.2.1	EnsemblPlantsGene:Solyc05g012520.2	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7
PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI00027658AF	UniProt:K4BXX4
MapMan:22.7.3.1	:	:	:	:	:

Description

Putative SNAP25 homologous protein SNAP30 [Source:Projected from Arabidopsis thaliana (AT1G13890) UniProtKB/Swiss-Prot;Acc:Q9LMG8]

Coordinates

chr5:+:5769322..5771346

Molecular Weight (calculated)

27121.7 Da

IEP (calculated)

6.696

GRAVY (calculated)

-1.045

Length

248 amino acids

Sequence
(BLAST)

001: MKAGRRTSSE PVLVTPDDDD FGTSSSSSGG TRNKHKSKTE DFDNMSVQEL EGYAVDQAKE TTSSVNNCLK IAEDIRQEGA QTLDTLHKQG EQINRTHMMA
101: VEMDRDLSKG EKLLNNLGGM FAMPWKPKKT HDIKGPRTSK DDNHKGKGSA SEREKLGLSN GKKGKSASST PPPESMNAMQ QIESEKAKQD DALSDLSNIL
201: GDLKGMAVDM GSELDKQNKA IDDLDKDVDE LNSRVKGANR RARQIVGK

Best Arabidopsis Sequence Match ( AT1G13890.2 )
(BLAST)

001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK

Arabidopsis Description

SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.