Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026875.1-P | Field mustard | cytosol | 53.61 | 85.98 |
| CDY16118 | Canola | cytosol | 86.69 | 85.71 |
| CDY33792 | Canola | cytosol | 86.69 | 85.71 |
| KRH70869 | Soybean | cytosol | 68.06 | 63.93 |
| KRH75005 | Soybean | cytosol | 66.92 | 62.86 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 59.7 | 56.07 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 51.33 | 54.44 |
| PGSC0003DMT400072798 | Potato | cytosol | 54.75 | 54.34 |
| Solyc05g012520.2.1 | Tomato | nucleus | 50.57 | 53.63 |
| AT5G61210.1 | Thale cress | nucleus | 59.7 | 52.33 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 52.09 | 49.64 |
| AT5G07880.1 | Thale cress | nucleus | 46.01 | 48.21 |
| Zm00001d019505_P001 | Maize | nucleus | 49.05 | 45.42 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 50.19 | 45.36 |
| KXG34983 | Sorghum | nucleus, plastid | 49.05 | 44.48 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 49.81 | 42.95 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 49.43 | 41.53 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 31.18 | 34.17 |
| Os02t0437200-01 | Rice | plasma membrane | 19.01 | 33.56 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.3.1 | EntrezGene:837948 | ProteinID:AAF79396.1 | ProteinID:AEE29080.1 | ProteinID:ANM58400.1 |
| ArrayExpress:AT1G13890 | EnsemblPlantsGene:AT1G13890 | RefSeq:AT1G13890 | TAIR:AT1G13890 | RefSeq:AT1G13890-TAIR-G | EnsemblPlants:AT1G13890.2 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| InterPro:IPR000727 | RefSeq:NP_001318998.1 | RefSeq:NP_172842.1 | PFscan:PS50192 | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 |
| UniProt:Q9LMG8 | SMART:SM00397 | Symbol:SNAP30 | SUPFAM:SSF58038 | InterPro:T_SNARE_dom | UniParc:UPI0000135B05 |
| SEG:seg | : | : | : | : | : |
Description
SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
Coordinates
chr1:+:4751451..4753018
Molecular Weight (calculated)
29077.0 Da
IEP (calculated)
6.075
GRAVY (calculated)
-1.042
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.