Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 91.48 | 89.14 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 83.61 | 87.63 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 60.0 | 76.25 |
| Zm00001d019505_P001 | Maize | nucleus | 69.18 | 74.3 |
| KXG34983 | Sorghum | nucleus, plastid | 68.85 | 72.41 |
| Os02t0437200-01 | Rice | plasma membrane | 31.15 | 63.76 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 51.48 | 63.31 |
| Bra026875.1-P | Field mustard | cytosol | 29.84 | 55.49 |
| KRH56857 | Soybean | nucleus | 52.13 | 53.0 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 47.87 | 52.9 |
| CDY42860 | Canola | cytosol, plastid | 47.21 | 51.61 |
| CDY47025 | Canola | nucleus, plastid | 46.89 | 51.44 |
| KRH03094 | Soybean | cytosol | 50.49 | 51.33 |
| KRH63266 | Soybean | nucleus | 48.85 | 51.2 |
| TraesCS3D01G384300.1 | Wheat | cytosol | 42.95 | 51.17 |
| CDX73442 | Canola | nucleus | 34.43 | 50.72 |
| AT5G61210.1 | Thale cress | nucleus | 49.84 | 50.67 |
| KRH54642 | Soybean | nucleus | 48.2 | 50.34 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 48.52 | 50.34 |
| Bra012978.1-P | Field mustard | nucleus | 50.16 | 50.16 |
| PGSC0003DMT400083166 | Potato | nucleus | 50.16 | 50.0 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 49.84 | 49.84 |
| AT1G13890.2 | Thale cress | nucleus | 42.95 | 49.81 |
| CDY02165 | Canola | nucleus | 49.84 | 49.67 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 49.84 | 49.67 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 49.84 | 49.67 |
| CDY23079 | Canola | nucleus | 49.51 | 49.67 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 44.59 | 48.57 |
| Bra005958.1-P | Field mustard | cytosol | 46.23 | 48.29 |
| AT5G07880.1 | Thale cress | nucleus | 39.34 | 47.81 |
| CDX78314 | Canola | cytosol | 45.9 | 47.78 |
| KRH70869 | Soybean | cytosol | 42.62 | 46.43 |
| CDY33792 | Canola | cytosol | 40.33 | 46.24 |
| CDY16118 | Canola | cytosol | 40.33 | 46.24 |
| Solyc05g012520.2.1 | Tomato | nucleus | 37.38 | 45.97 |
| KRH75005 | Soybean | cytosol | 41.97 | 45.71 |
| Solyc03g115470.2.1 | Tomato | nucleus | 49.84 | 44.31 |
| TraesCS4D01G249100.1 | Wheat | cytosol, plastid | 36.07 | 44.18 |
| CDX81075 | Canola | nucleus | 14.1 | 43.0 |
| PGSC0003DMT400072798 | Potato | cytosol | 36.07 | 41.51 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 44.92 | 40.06 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 45.25 | 39.43 |
| Bra013246.1-P | Field mustard | cytosol | 36.39 | 36.51 |
| Bra032989.1-P | Field mustard | nucleus | 40.0 | 31.85 |
| Bra009311.1-P | Field mustard | plastid | 45.25 | 13.56 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G044400.1 | EnsemblPlantsGene:TraesCS7D01G044400 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 |
| PANTHER:PTHR19305:SF7 | PFscan:PS50192 | SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | TIGR:cd15841 |
| TIGR:cd15861 | MapMan:22.7.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:22612112..22614011
Molecular Weight (calculated)
33300.0 Da
IEP (calculated)
9.597
GRAVY (calculated)
-0.843
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATRSSFFG SNGKKKPAAS ARNPFDSDSD DDGGMVQQRP PMRASSVPTP AAAPVPADER NSLFAGAAAA GPGPSGFASS SSAAARGRYR NDFRDSGGVE
101: AQSVQELEGY AAYKAEETTR RVDGCLRVAE EMRDTASKTL LQVHQQGQQI RRTHAMALDI DQDLSRGEKL LGDLGGLFSK KWKPKKNGAI RGPMLTRDDS
201: FIRKGSHMEQ RHKLGLSDRP RRSNARQFLS EPTSELEKVE VEKAKQDDGL SDLSDILTEL KGMAIDMGTE IEGQTKDLGH AEKDFDELNY RVKGANTRTR
301: RLLGR
101: AQSVQELEGY AAYKAEETTR RVDGCLRVAE EMRDTASKTL LQVHQQGQQI RRTHAMALDI DQDLSRGEKL LGDLGGLFSK KWKPKKNGAI RGPMLTRDDS
201: FIRKGSHMEQ RHKLGLSDRP RRSNARQFLS EPTSELEKVE VEKAKQDDGL SDLSDILTEL KGMAIDMGTE IEGQTKDLGH AEKDFDELNY RVKGANTRTR
301: RLLGR
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.