Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07880.1 | CDX98070 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY15993 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY26558 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY26559 | AT1G12360.1 | 11591731 |
| AT5G07880.1 | CDY30074 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005958.1-P | Field mustard | cytosol | 95.56 | 95.89 |
| CDX81075 | Canola | nucleus | 24.91 | 73.0 |
| CDY42860 | Canola | cytosol, plastid | 67.24 | 70.61 |
| CDX73442 | Canola | nucleus | 49.49 | 70.05 |
| CDY02165 | Canola | nucleus | 71.33 | 68.3 |
| AT5G07880.1 | Thale cress | nucleus | 58.36 | 68.13 |
| CDY47025 | Canola | nucleus, plastid | 62.46 | 65.83 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 76.79 | 65.79 |
| CDY23079 | Canola | nucleus | 68.26 | 65.79 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 77.47 | 64.86 |
| KRH56857 | Soybean | nucleus | 58.7 | 57.33 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 59.73 | 57.19 |
| PGSC0003DMT400083166 | Potato | nucleus | 59.39 | 56.86 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 59.04 | 56.54 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 47.78 | 56.45 |
| KRH03094 | Soybean | cytosol | 57.0 | 55.67 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 57.34 | 55.08 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 51.88 | 55.07 |
| KRH54642 | Soybean | nucleus | 53.24 | 53.42 |
| KRH63266 | Soybean | nucleus | 52.9 | 53.26 |
| Solyc03g115470.2.1 | Tomato | nucleus | 60.41 | 51.6 |
| CDY33792 | Canola | cytosol | 46.76 | 51.5 |
| CDY16118 | Canola | cytosol | 46.76 | 51.5 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 47.78 | 48.11 |
| Zm00001d019505_P001 | Maize | nucleus | 46.42 | 47.89 |
| KXG34983 | Sorghum | nucleus, plastid | 45.73 | 46.21 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 47.78 | 45.9 |
| Os02t0437200-01 | Rice | plasma membrane | 22.87 | 44.97 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 47.78 | 44.73 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 32.08 | 39.17 |
Protein Annotations
| EnsemblPlants:CDX78314 | EnsemblPlantsGene:GSBRNA2T00129669001 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | ProteinID:CDX78314 | ProteinID:CDX78314.1 | SEG:seg |
| SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0004EE6243 | MapMan:22.7.3.1 | : | : |
Description
BnaA03g02260D
Coordinates
chrLK031815:-:150679..151881
Molecular Weight (calculated)
32767.4 Da
IEP (calculated)
6.894
GRAVY (calculated)
-0.961
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGLKQPKPA GSGPSGSNPF DSDDDTLKPS NRINPEPSLA AKNLSLNSFD DDDCDEKRFT TSSKPSLDLD AKSRYRNGFR DSGGVENQSV QELESYAVYK
101: SQETTKTVQG CLKVAEEIRS DAARTLVMLN EQGEKITRTH QKTVDIDHDL SRGEKLLGSL AGIFSPTWKP KKTRSITGPV ITKVGESPKR RVNHLETREK
201: LGLNHLPKPQ SRTHEPLPES ANAYQKLEME KAKQDDGLAD LSDLLSELKN MAVDMGTEIE RQNNGLDHLQ DDVDELNFRV KQSNQRARHL LRK
101: SQETTKTVQG CLKVAEEIRS DAARTLVMLN EQGEKITRTH QKTVDIDHDL SRGEKLLGSL AGIFSPTWKP KKTRSITGPV ITKVGESPKR RVNHLETREK
201: LGLNHLPKPQ SRTHEPLPES ANAYQKLEME KAKQDDGLAD LSDLLSELKN MAVDMGTEIE RQNNGLDHLQ DDVDELNFRV KQSNQRARHL LRK
001: MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K
Arabidopsis Description
SNAP29SNAP25 homologous protein SNAP29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.