CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04038
KRH28021
KRH57307
KRH77416

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	KRH04038	AT1G12360.1	11591731
AT5G07880.1	KRH28021	AT1G12360.1	11591731
AT5G07880.1	KRH57307	AT1G12360.1	11591731
AT5G07880.1	KRH77416	AT1G12360.1	11591731
AT5G61210.1	KRH04038	AT1G12360.1	11591731
AT5G61210.1	KRH28021	AT1G12360.1	11591731
AT5G61210.1	KRH57307	AT1G12360.1	11591731
AT5G61210.1	KRH77416	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56857	Soybean	nucleus	89.67	89.67
KRH63266	Soybean	nucleus	70.67	72.85
KRH54642	Soybean	nucleus	70.67	72.6
GSMUA_Achr4P23350_001	Banana	nucleus	53.67	64.92
VIT_17s0000g06860.t01	Wine grape	nucleus	66.0	64.92
CDY42860	Canola	cytosol, plastid	59.67	64.16
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	65.33	64.05
Solyc06g069570.2.1	Tomato	nucleus, plastid	65.0	63.73
PGSC0003DMT400083166	Potato	nucleus	65.0	63.73
AT5G61210.1	Thale cress	nucleus	61.67	61.67
Bra029328.1-P	Field mustard	nucleus, plastid	60.33	61.56
CDY02165	Canola	nucleus	62.67	61.44
Bra012978.1-P	Field mustard	nucleus	62.33	61.31
CDY23079	Canola	nucleus	61.67	60.86
CDY47025	Canola	nucleus, plastid	55.67	60.07
Solyc03g115470.2.1	Tomato	nucleus	67.33	58.89
Bra005958.1-P	Field mustard	cytosol	56.0	57.53
CDX73442	Canola	nucleus	39.33	57.0
CDX78314	Canola	cytosol	55.67	57.0
GSMUA_Achr5P01680_001	Banana	cytosol	51.67	56.16
KRH70869	Soybean	cytosol	52.33	56.07
KRH75005	Soybean	cytosol	51.0	54.64
Zm00001d019505_P001	Maize	nucleus	51.67	54.58
AT5G07880.1	Thale cress	nucleus	45.33	54.18
KXG34983	Sorghum	nucleus, plastid	51.0	52.76
TraesCS7A01G049300.1	Wheat	nucleus, plastid	50.0	51.55
TraesCS7D01G044400.1	Wheat	nucleus, plastid	51.33	50.49
CDX99033	Canola	endoplasmic reticulum, extracellular	57.33	49.14
TraesCS4A01G435200.1	Wheat	cytosol, plastid	51.0	48.88
CDX69988	Canola	endoplasmic reticulum, extracellular	55.67	48.83
CDX81075	Canola	nucleus	16.0	48.0
Bra013246.1-P	Field mustard	cytosol	44.33	43.75
Os02t0437200-01	Rice	plasma membrane	21.0	42.28
HORVU7Hr1G008760.1	Barley	nucleus, plastid	32.0	40.0
Bra032989.1-P	Field mustard	nucleus	49.33	38.64
Bra009311.1-P	Field mustard	plastid	56.33	16.6

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100793323	MapMan:22.7.3.1	EMBL:ACUP02010335	EMBL:BT097811	UniProt:C6TJG5
ncoils:Coil	EnsemblPlantsGene:GLYMA_17G076600	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
InterPro:IPR000727	EnsemblPlants:KRH03094	ProteinID:KRH03094	ProteinID:KRH03094.1	PFscan:PS50192	PANTHER:PTHR19305
PANTHER:PTHR19305:SF7	SMART:SM00397	SUPFAM:SSF58038	InterPro:T_SNARE_dom	UniParc:UPI0001B16684	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:5989206..5992047

Molecular Weight (calculated)

33312.8 Da

IEP (calculated)

7.786

GRAVY (calculated)

-0.893

Length

300 amino acids

Sequence
(BLAST)

001: MFGSKKSPLK VAKPSSVESW TNPFDSNDEG MDTKKYSSSR KTSSERALTT LGVNTNPFDD GTDANKKSSS TLYGFQSANW NKYKNDFRDS GGLENQSVQE
101: LESYAVYKAE ETTNSVTNCL KIAENIREEA TQTLVTLHQQ GEQITRSHHV AADIDHDLTR GEKLLGSLGG LFSKTWKPKK TRAITGPVIV GDDPVRRKGN
201: HLEQREKLGL TSAPKGQSKL RSPPQEPTNA FEKVEVEKNK QDDALSDLSD LLGELKGMAV DMGSEIERHN KALNHLYDDV DELNFRVIGA NQRGRRLLGK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.