Factsheet for Bra032989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019760.1-P
Bra026974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	Bra019760.1-P	AT1G12360.1	11591731
AT5G07880.1	Bra026974.1-P	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013246.1-P	Field mustard	cytosol	63.71	80.26
Bra005958.1-P	Field mustard	cytosol	51.44	67.47
Bra029328.1-P	Field mustard	nucleus, plastid	44.65	58.16
Bra012978.1-P	Field mustard	nucleus	45.95	57.7
AT5G07880.1	Thale cress	nucleus	37.6	57.37
Solyc06g069570.2.1	Tomato	nucleus, plastid	41.78	52.29
PGSC0003DMT400083166	Potato	nucleus	41.25	51.63
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	39.69	49.67
KRH56857	Soybean	nucleus	38.9	49.67
KRH03094	Soybean	cytosol	38.64	49.33
VIT_17s0000g06860.t01	Wine grape	nucleus	38.12	47.87
GSMUA_Achr4P23350_001	Banana	nucleus	30.55	47.18
KRH54642	Soybean	nucleus	35.77	46.92
KRH63266	Soybean	nucleus	34.99	46.05
Solyc03g115470.2.1	Tomato	nucleus	39.43	44.02
Bra026875.1-P	Field mustard	cytosol	18.8	43.9
GSMUA_Achr5P01680_001	Banana	cytosol	30.55	42.39
TraesCS7D01G044400.1	Wheat	nucleus, plastid	31.85	40.0
TraesCS7A01G049300.1	Wheat	nucleus, plastid	30.29	39.86
Zm00001d019505_P001	Maize	nucleus	29.5	39.79
TraesCS4A01G435200.1	Wheat	cytosol, plastid	31.33	38.34
KXG34983	Sorghum	nucleus, plastid	28.98	38.28
Os02t0437200-01	Rice	plasma membrane	14.1	36.24
HORVU7Hr1G008760.1	Barley	nucleus, plastid	22.19	35.42
Bra009311.1-P	Field mustard	plastid	66.06	24.85

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.20.5.110
MapMan:22.7.3.1	EnsemblPlantsGene:Bra032989	EnsemblPlants:Bra032989.1	EnsemblPlants:Bra032989.1-P	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Kinase-like_dom_sf	UniProt:M4EW06	InterPro:NAF_dom	PFAM:PF03822
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	SUPFAM:SSF56112	SUPFAM:SSF58038	UniParc:UPI00025455F2	SEG:seg

Description

AT5G61210 (E=2e-091) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding

Coordinates

chrA02:-:22076368..22077753

Molecular Weight (calculated)

43564.6 Da

IEP (calculated)

9.524

GRAVY (calculated)

-0.768

Length

383 amino acids

Sequence
(BLAST)

001: MAMKPDGKSP ITSKDLSRRY FHQLISAVGY CHSRSVFHRD LKFHIISGSP GFNLFEMFSD RVERFVSGWT AARVLQHRSY RLLDSCNESF FQVWITMFGL
101: KKPLERLSKH HKPSSSASAS KSNPFDSDDE SDGNKKHTLK PSNKISPQPS LPTTKKNHSF NPFDDANDEE EVEKRLKPSF KNHFRESGGV ENQTVQELES
201: YAMYKSDETT KTVQGCLKVA QGIRSDATRT LVMLNEEGEK ITRTHHKAVD LDHDLTRGEK LLGSLGGIFS RTWKPKKTRS ITGPVITRGE SPKRRVNNLE
301: TRKKLGLNQL PKPDSRTNEP LPESADAYQK MEMEKAKQDD GFADLSDLLS ELKNMAIDMG TEIERFSFIS LNYCTYIFSM SIP

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.